Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2868 ATGGGTAGAACACCCTGCTGTCTAAAACAACACATTTTTAAAGGAGCATGGTCTAAGGAGGAAGATCAACTCCTCATTAATTATGTAAACTGTCATGGAGAAGGCAATTGGAGATGCCTTCCTAAGGCAGCAGGTTTGCTTCGGTGTGGTAAAAGTTGCAGACTGAGATGGATGAATTACCTGAGACCCAACCTCAAGAAGGGGAACTTCACTCGAGAAGAAACTGATCTCATCATTCACCACCATAGCTTACTAGGAAACAGATGGTCACAGATAGCAGCATGTTTACCTGGAAGAACAGATAATGAGATAAAAAACTACTGGAACACCCACATCAAACGTCAGCTCTATGCCAATGGAATGGATCCTGTAACTCATAAACCACTCAACAAGGAAACCAATGAGACCACAGATCCACCTGCTAACTCTCAAGTGACTGAGGTTGCCACCACAAGTGAAAATGGAACTGACAACAACAACAACAGTTGCAGCTTCACTACTGGTGACAACAACCAAATCAACTATTTTAATGTGTTTCTCAATTCAAAGGTGCAGATCAGCAGTGATGATTACTCAACTGGTGATAAAGGTGAATGCTCAAACAACAGTAGTGGTGTTACCATAGAGGAAGCTCATCCTCAACTCAACTTGAACCTTTCCTTATCTCCACCACCAAAACCCCAAGATTTTATGGTGAACCCTAAAAGGCTGCAACCACAAGGACAACAAGAAGAGCAAGTTTTGTTCCCAGGTAATGTGAATGTTAGTGGTGGTAAACAAAGTGTGTGCCTCTGGTGCAGTCTAGGGTTGCAAAGTAGCCATGCTTGTAGCAGCAAAGACAAGGGTTGTTGCACTGCTACTACAGTTGCTCCACCTGTTGGTAACCGTGATGATTGA 897 0.4314 MGRTPCCLKQHIFKGAWSKEEDQLLINYVNCHGEGNWRCLPKAAGLLRCGKSCRLRWMNYLRPNLKKGNFTREETDLIIHHHSLLGNRWSQIAACLPGRTDNEIKNYWNTHIKRQLYANGMDPVTHKPLNKETNETTDPPANSQVTEVATTSENGTDNNNNSCSFTTGDNNQINYFNVFLNSKVQISSDDYSTGDKGECSNNSSGVTIEEAHPQLNLNLSLSPPPKPQDFMVNPKRLQPQGQQEEQVLFPGNVNVSGGKQSVCLWCSLGLQSSHACSSKDKGCCTATTVAPPVGNRDD* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2868 298 MobiDBLite consensus disorder prediction 129 165 - -
Pvu2g2868 298 CDD SANT 69 112 IPR001005 -
Pvu2g2868 298 CDD SANT 16 61 IPR001005 -
Pvu2g2868 298 Gene3D - 69 144 - -
Pvu2g2868 298 Gene3D - 13 66 - -
Pvu2g2868 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu2g2868 298 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pvu2g2868 298 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 247 - -
Pvu2g2868 298 SMART sant 13 63 IPR001005 -
Pvu2g2868 298 SMART sant 66 114 IPR001005 -
Pvu2g2868 298 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu2g2868 298 MobiDBLite consensus disorder prediction 134 165 - -
Pvu2g2868 298 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu2g2868 298 PANTHER TRANSCRIPTION FACTOR MYB7 1 247 - -
Pvu2g2868 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu2g2868 298 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu2g2868 298 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2868 Pvu-Chr2 44295291 44296750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2868 1 263 MYB Transcription Factor Family AT4G38620 44.776 2.16e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu2g2868 Myb_DNA-binding 3.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2868 K09422 - gmx:100808083 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2868 2 44295291 44296750 Pvu9g1634 9 22964840 22966499 PCT