Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2856 ATGCCTCTTTTAAGGAGAAAGCCTTTTTCCTTGGCTGAGCCCCCCGAGGAATTGAAGCCAGACGAGCCTGTTTACCAAATTCGATTTACAAAAGAAATCTTTCGAGATTATCCTGATTATTTGAAGCGATTGAATCTATACCGTCAGAGGCTTTGGATGTGTAAAGTCACTGGAAAAACGGGCTTGACTTATGAAGAGGCTATGGTGTCTGAACAGCATGCTACCGAGAAAGTTCAACAGTTTCCTAAGGAATTAATGACCACTGCTTTAGGGATTATTCAATACAGCATGCTCCCTTTGAAGGATCTTGCTGATTCTATTGGTGAACAGTTGCAGAAACGTTTGTTTGTCGGTGCTGAACTACATGGGAAAAAGGATGATGGAGTACATCCATGCAGAATATTAAAAGTAATTCCAAAAGGAGTCAACACATTCTGTTACGAGGTAGCTTGGCTTGACAAAAACAAAAATATAACTCAACAAGCTGAACTCTGCGCAGAAGATTTGGTGCATAAGAAGCCGCTTTTTAGTAGAAATATTTTGAAGTCTTTTATTCGGGAGTCTACATACCGGAATGCCCCTTGGGTTTTACATGATGAACTAGCAAAAAATCATGGAATTTCAATTGATATTCCTGAAGAATTAAGAAGAAGGGTTTTTTACAGAGATGGGCTTTTAATTTGCTCCAAGAAAAGGAAAAATGAGGAATCACTGGAAGACACTGATAACGGTAAAAGGAAGAAGTCTGATGGGGCACAAGTCGATGATTCATGCGAAGAGAAAGGAAATGCTCGACCCAAGAATGAAGCTATCAAATACCCCATTGATGATCTATTGGTGAAGCCTGGTCCAGGTGATCCTGCTTTTACTGATCGTCCTTCTCTATCAAAAGACTTCAACATTCCAATGAGTTGTGTTGGGGACCTCTTAATGGTTTGGGATTTGCTTAACTCCTTTGGGAGACTGTTGCACCTGTTGCCCTACTCTCTAGAAGATTTTGAAAATGCAATCTGTCATAAGGATAGCAATGTGGTTCTCCTTGTGGAATCTCATGCAGCACTTTTTCGATTTCTCATCAAAGACGACGATGAATACTCTTCGGCTGTGAAGAGCCGAAAATTGAAATCTAAGATTACGGTGAATAATTGGACAGAATATTTATGCTATTTCCTAGAGGTGATCAATATTCCTGAACTGCGACACCATGAAGCAACTATAAAACGGGGACATTATGGCCTTGTAGATGTGAGTGCTAAATTAGAAATCTTAAGCGAATTGGTCAATCAAGCCCTTGAAACCGCAGTTTTCAGGGAAAAGTTAGATGAGATTATTGAACAGCGGCAGGCACTTGGGGCCTCTAGAAGGGGAGAAGCATTGGAAAGTGGTAGGAGGAGAAGAGAAGAAAAAGAGCGGTTGAAGGCTGAGTCAGAAAGCAATGGATTTGTAGATGGGCTTCTGAATGGTGCAAAAGTCCCAAGGAACAATAATCATGGTATACAAAATGGAGACATGGGTGAGAAAAGTCTTGTAGGGATAGAACCATCTGAGCAAAACAGTCAATTGGATAGAAGTGAGATCACGCCTCAAAATCCTGCTTCAAAAAAGACACCTAAGCAGCTAAATTCAGAGCTGAAAGAACCAACCAAAAATGGAAAAGAATTATCCAGAAAGGAATCACCAAAACAGTCGAAGGCTGATAAGGAGGATCCATCAGAGAAGAATAGTGAAGAGCAGAGGAAAGAATATTTCGAAAGGGAGATGGAGAAACGATTTATTCGTAGAAGTCCATTAGGTAAAGACAGAGATTACAATAGGTATTGGTGGTTCCGTCGAGATGGGAGGATATTTGTTGAAAGCTGCGACTCCAAGGAATGGGGATACTACAGCAGTAAGGAAGAGATCGATGCATTGATGAGTTCACTGAATTGCAAGGGTGAGCGGGAAAGAGCACTGCGAAAGCAACTAAAAAAATATTATACTAAAATATGCTCAGAACTCCATAAAAGGTCAAAGGATTTGATGCACAGGATTACAGATGAATCTGTGCTTCGAAGGTCTACTCGTGTTAGAGCTCCACCTAGGCAGAACCCTGCCAATGCTTTCCTCAGATATGGTAACAAGTGGAAAGAAGAATAG 2136 0.4082 MPLLRRKPFSLAEPPEELKPDEPVYQIRFTKEIFRDYPDYLKRLNLYRQRLWMCKVTGKTGLTYEEAMVSEQHATEKVQQFPKELMTTALGIIQYSMLPLKDLADSIGEQLQKRLFVGAELHGKKDDGVHPCRILKVIPKGVNTFCYEVAWLDKNKNITQQAELCAEDLVHKKPLFSRNILKSFIRESTYRNAPWVLHDELAKNHGISIDIPEELRRRVFYRDGLLICSKKRKNEESLEDTDNGKRKKSDGAQVDDSCEEKGNARPKNEAIKYPIDDLLVKPGPGDPAFTDRPSLSKDFNIPMSCVGDLLMVWDLLNSFGRLLHLLPYSLEDFENAICHKDSNVVLLVESHAALFRFLIKDDDEYSSAVKSRKLKSKITVNNWTEYLCYFLEVINIPELRHHEATIKRGHYGLVDVSAKLEILSELVNQALETAVFREKLDEIIEQRQALGASRRGEALESGRRRREEKERLKAESESNGFVDGLLNGAKVPRNNNHGIQNGDMGEKSLVGIEPSEQNSQLDRSEITPQNPASKKTPKQLNSELKEPTKNGKELSRKESPKQSKADKEDPSEKNSEEQRKEYFEREMEKRFIRRSPLGKDRDYNRYWWFRRDGRIFVESCDSKEWGYYSSKEEIDALMSSLNCKGERERALRKQLKKYYTKICSELHKRSKDLMHRITDESVLRRSTRVRAPPRQNPANAFLRYGNKWKEE* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2856 711 Coils Coil 459 479 - -
Pvu2g2856 711 MobiDBLite consensus disorder prediction 539 580 - -
Pvu2g2856 711 MobiDBLite consensus disorder prediction 457 477 - -
Pvu2g2856 711 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 709 - -
Pvu2g2856 711 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Pvu2g2856 711 MobiDBLite consensus disorder prediction 512 538 - -
Pvu2g2856 711 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 592 658 IPR028941 -
Pvu2g2856 711 MobiDBLite consensus disorder prediction 237 266 - -
Pvu2g2856 711 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 405 441 IPR028942 -
Pvu2g2856 711 MobiDBLite consensus disorder prediction 454 580 - -
Pvu2g2856 711 Pfam DDT domain 304 361 IPR018501 -
Pvu2g2856 711 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Pvu2g2856 711 SMART testlast3 303 364 IPR018501 -
Pvu2g2856 711 ProSiteProfiles DDT domain profile. 303 364 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2856 Pvu-Chr2 44177945 44184004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2856 409 657 Homeobox Transcription Factor Family AT5G44180 28.679 7.06e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pvu2g2856 WAC_Acf1_DNA_bd 4.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2856 - - var:108323886 1278.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2856 2 44177945 44184004 Pvu2g2856 2 44177945 44184004 ECH
Pvu2g2856 2 44177945 44184004 Pvu9g1626 9 22868551 22874157 PCT