Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2821 ATGGCTAACAACAAGAGCTCCAAGAAACCAATAAGTCTCAATGACAGTCACTATCGCTTCCTCCAAGATCATTCTGCTCCTCCCAAACCCTCTTCCAAACCTTTCGATGATGAAGAAACGATCGAATCCTCCACGCCAAAACAACAACACCAAAACATTCCCCAATTTTCCGCAATCACCGACTTCGATTCTCCAATCGGGTTAGCATCGGACGACAAATATGAACCGATCAAGGTACATGAAGCGCAACAAGTTGTTGCTCCGTCCTACCATATTTCTACTGCTAGGCGCAACATAGACAAGAAACACGAACCGACCATATTTAAAGAAGAAGAACAGGAAGAAGAAGATTCACCCAACGTGGTTAGTTCTTCCCCTGGGCAAAACTCCGATGAGAAACACGAACCGATATTTTTTGAAGAAGAAGCTCCACCCGACGTGGTTGATTTTCCCCCTAAGGAAGAAAGGACGACGAAGGTGAAAGTTCAGGGGCGGCGCCGCCTCTGCAAGATTGTGCATGAAGACGCTGGAAAAAGCGTGGCGGTTGATCAGTCCAATTTTGATGAACTGATCGACCTTGATTCGCCGATTCCGGTGCCAAGAAACGTCATCCAGATTGAGGAGAGTGGGGGCAAGAATGAAATTAGGGATATTTTGACTGAACTGAACGCCAAGTTTGAGTTGCTATCGGTTGAGAGGAAGCCGAGGCCGAAGCGTGTTGAGGGTTTGGTTAAAGGTAAAGAAAGTTATGATGATGAGGGTTTAGAGTATGGGAGTGCAGGGTCTTCGTTTTCTCCGCATCAGGAGAGCTTGTCTGAGGGTAATAAGAATGATGGTGGCCACAGTATTGAGTGTGATTCAGAGGATTCTGTTGAAGTGGTGGATAATTTTGTGCCAGAGAATGATGGTTCAATAACTCTGACGGGTCCTAGATCAACTTATCAGTTGCCTGCTAAAATTGCAAAAATGTTGTTTCCACATCAGCGGGAGGGGTTGACGTGGCTCTGGTCTTTGCATTGTCTGGGAAAAGGGGGAATCTTGGGGGATGATATGGGTTTGGGGAAAACAATGCAGATCTGTAGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATAAGAAGGGCATTGGTTGTAGCTCCCAAAACTTTATTGCCCCATTGGATCAAAGAATTGTCAGCTGTGGGTCTATCCAAGAATACAAGAGAATATTTTGGAACTTCTACAAAACTCAGAGAATATGAACTGCAGTACATACTTCAGGACAAAGGAGTTCTTCTCACTACTTATGATATTGTCCGCAACAATTCTAAGTCCTTACGGGGGAATAATTATTTAGATGACGAGGAAAGTGAAGATAATGCTACTTGGGACTACATGATACTGGATGAGGGGCACCTTATAAAGAACCCAAACACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATCAGTGGCACACCGCTGCAAAATAATCTCAAGGAGTTGTGGGCGTTGTTCAATTTTTGTTGCCCAGAGTTGCTTGGTGACAACAAATGGTTTAAAGAAAAATTTGAAAAGCCCATACTCCGTGGAAATGACAAGCATGCTTCTGACAGGGAACAACGTGTTGGTTCATCTGTAGCAAAGGAACTAAGAGAACGTATTCAGCCTTACTTTTTAAGACGAATGAAGAGTGAGGTATTCAGTCGAGATGATGAAAAAACAACTGCAAAACTTTCTCAAAAACAAGAGATCATTGTGTGGCTTCGATTGACCAGTGTTCAGCGGTATCTTTATGAAGCGTTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCATTGGCTGCCCTTACGATTTTAAAGAAAATATGTGATCATCCACTTTTGTTGACGAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAAGCTGATGTTGCAACAAAATTGGCAATGCACATAGCCGATGTTGCTGACACAGATAGGTTTAGAGATGAACAAGACGTGTCATGCAAAATTTCCTTCATTATGTCATTGTTGGATAATTTGATCCCAGAAGGGCATTGCGTGCTTATATTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCCTACTATCCCAAGGTTATGACTTTTTACGAATTGATGGAACAACAAAAGTCAATGACAGACTAAAGATTGTTAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACGTCTCAGGTTGGTGGTTTAGGACTTACACTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGTGTTGACCGTGCTTATCGAATTGGTCAAAAGAAAGATGTCATTGTATATAGACTGATGACGTGCGGAACTGTTGAAGAAAAGATCTACCGGAAACAGGTATACAAGGGAGGATTATTCAAAACGGCTACCGAACATAAAGAACAGATCCGGTACTTTAGCCAGCAGGATCTTAGGGAACTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGACCGTCAATATACATTTGATGACTATTTCAAAGCACACATAGAGTTCTTGAAGAGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCAAAGACAGGGCCGCCGGTTCGTGCTGAACTTGAGGATGATGAAGTTCCAAGGAATTATGGGACTAGATTTATTGGGACTTCAAGATCATCATCAAATGACCATATTACTTATGGCTCCGAGTTTGCATTTAATCCTAAGGATGTTTCCACAAGCAAAAAAGGTTCTTCTCCTATCAGTGCTGGTAAATTGACCGAATCAGATATCAAGGATAAAATTAATCGGCTCTCTCAAACTCTCTCAAATGCGGCTATGATTGCTAAATTACCTGACAAGGGTGAGAAACTGCAGAAACGGCTTGAGGAACTGAGTTTAGAGCTGGCTGAACTAAGAAGCGAAAGAAATGTGATTGATTTGGATGCTTTTACCACTGAATTTCAACAAGGGTTGAACGTATAG 3093 0.4235 MANNKSSKKPISLNDSHYRFLQDHSAPPKPSSKPFDDEETIESSTPKQQHQNIPQFSAITDFDSPIGLASDDKYEPIKVHEAQQVVAPSYHISTARRNIDKKHEPTIFKEEEQEEEDSPNVVSSSPGQNSDEKHEPIFFEEEAPPDVVDFPPKEERTTKVKVQGRRRLCKIVHEDAGKSVAVDQSNFDELIDLDSPIPVPRNVIQIEESGGKNEIRDILTELNAKFELLSVERKPRPKRVEGLVKGKESYDDEGLEYGSAGSSFSPHQESLSEGNKNDGGHSIECDSEDSVEVVDNFVPENDGSITLTGPRSTYQLPAKIAKMLFPHQREGLTWLWSLHCLGKGGILGDDMGLGKTMQICSFLAGLFHSRLIRRALVVAPKTLLPHWIKELSAVGLSKNTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGNNYLDDEESEDNATWDYMILDEGHLIKNPNTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEKPILRGNDKHASDREQRVGSSVAKELRERIQPYFLRRMKSEVFSRDDEKTTAKLSQKQEIIVWLRLTSVQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEADVATKLAMHIADVADTDRFRDEQDVSCKISFIMSLLDNLIPEGHCVLIFSQTRKMLNLIQECLLSQGYDFLRIDGTTKVNDRLKIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQYTFDDYFKAHIEFLKSQGIAGVSHHSLLFSKTGPPVRAELEDDEVPRNYGTRFIGTSRSSSNDHITYGSEFAFNPKDVSTSKKGSSPISAGKLTESDIKDKINRLSQTLSNAAMIAKLPDKGEKLQKRLEELSLELAELRSERNVIDLDAFTTEFQQGLNV* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2821 1030 MobiDBLite consensus disorder prediction 261 277 - -
Pvu2g2821 1030 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 684 843 IPR001650 -
Pvu2g2821 1030 Gene3D - 583 878 IPR027417 -
Pvu2g2821 1030 MobiDBLite consensus disorder prediction 45 59 - -
Pvu2g2821 1030 PANTHER SNF2/RAD54 FAMILY MEMBER 297 914 - -
Pvu2g2821 1030 MobiDBLite consensus disorder prediction 251 285 - -
Pvu2g2821 1030 PANTHER OS04G0692700 PROTEIN 297 914 - -
Pvu2g2821 1030 Pfam SNF2-related domain 341 631 IPR000330 GO:0005524|GO:0140658
Pvu2g2821 1030 MobiDBLite consensus disorder prediction 95 109 - -
Pvu2g2821 1030 Gene3D - 306 582 IPR038718 -
Pvu2g2821 1030 MobiDBLite consensus disorder prediction 133 158 - -
Pvu2g2821 1030 SMART ultradead3 319 522 IPR014001 -
Pvu2g2821 1030 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 336 511 IPR014001 -
Pvu2g2821 1030 Coils Coil 991 1018 - -
Pvu2g2821 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 577 866 IPR027417 -
Pvu2g2821 1030 MobiDBLite consensus disorder prediction 1 64 - -
Pvu2g2821 1030 MobiDBLite consensus disorder prediction 90 158 - -
Pvu2g2821 1030 Pfam Helicase conserved C-terminal domain 681 793 IPR001650 -
Pvu2g2821 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 561 IPR027417 -
Pvu2g2821 1030 MobiDBLite consensus disorder prediction 30 44 - -
Pvu2g2821 1030 CDD SF2_C_SNF 673 804 - -
Pvu2g2821 1030 SMART helicmild6 710 793 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2821 Pvu-Chr2 43869022 43877839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2821 307 843 RAD5 or RAD16-like Gene Family AT3G16600 24.959 1.80e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu2g2821 SNF2_N 1.2e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2821 K20093 - gmx:100779283 1678.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2821 2 43869022 43877839 Pvu2g2821 2 43869022 43877839 ECH