Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2816 ATGATGGAAGATGAGAACCATGCCACTTTGCCAAATGCTTATAACTCCGGAAGCCCCGAAAGCCCTTGCTTAAAGACAACCAACACCAACATCAACAACAACATCAACACCCCAACCACACACAACAACAATAATCATAACCATAATAACAACAACAATAACCACAACAAAGAACAAGACAGGTTCCTCCCTATTGCCAATGTGGGAAGAATCATGAAAAAGGTCATTCCTTCCAATGGAAAAATCTCTAAGGACGCAAAGGAAACTGTCCAAGAGTGTGTCTCTGAGTTCATCAGCTTCGTCACTGGAGAAGCCTCTGACAAATGTCAGAGGGAGAAGAGAAAGACCATCAATGGTGATGATGTCATATGGGCCATCACAACCCTAGGGTTTGAGGATTACGTTGAACCCTTGAAAATTTACCTTCAGAAATATAAAGAGATTGAGGGAGAAAAACTTAACATTCCAAAGCAACTTCGTTCTGAACAAAGGCTACAACAACACCAACAAAATAATAGTAATAGTAGCCAAGAAGATAATAATCAACAGCAATTCAATGCTGCATATGCCTCAACCAATCTCATTTCTCAGCCTCCATATGTGGCCACTGATCAGAAGTTTTCACTACCCTTCTCTCCAAACTCAATTCAGAATCACCACATTGATTCAGTGGGCCACTGGTATGAATAA 690 0.4072 MMEDENHATLPNAYNSGSPESPCLKTTNTNINNNINTPTTHNNNNHNHNNNNNNHNKEQDRFLPIANVGRIMKKVIPSNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKIYLQKYKEIEGEKLNIPKQLRSEQRLQQHQQNNSNSSQEDNNQQQFNAAYASTNLISQPPYVATDQKFSLPFSPNSIQNHHIDSVGHWYE* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2816 229 Gene3D Histone, subunit A 48 192 IPR009072 GO:0046982
Pvu2g2816 229 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 62 126 IPR003958 -
Pvu2g2816 229 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Pvu2g2816 229 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Pvu2g2816 229 PRINTS CCAAT-binding transcription factor subunit A signature 128 146 - -
Pvu2g2816 229 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2 219 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pvu2g2816 229 MobiDBLite consensus disorder prediction 1 58 - -
Pvu2g2816 229 SUPERFAMILY Histone-fold 59 182 IPR009072 GO:0046982
Pvu2g2816 229 MobiDBLite consensus disorder prediction 162 181 - -
Pvu2g2816 229 MobiDBLite consensus disorder prediction 9 58 - -
Pvu2g2816 229 ProSitePatterns NF-YB/HAP3 subunit signature. 93 109 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pvu2g2816 229 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 2 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2816 Pvu-Chr2 43838330 43839275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2816 57 227 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.481 2.19e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pvu2g2816 CBFD_NFYB_HMF 5.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2816 K08065 - gmx:100778216 306.605