Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2808 ATGATGGCTTCTGGAACTCTCAACCTTCCTCCTGGCTTTTCCTTCTCTCCAACTGATGAACAACTTCTCCTTCATTTTCTTTATCCCAAGACCTCTCTACCATCTCATCCCACCATCATTCCAGACCTTGACCTCTCTCTGCATGATCCATGGCACCTAAATGGTAAAGCGTTGTCAAGTGGAAATCAGCACTATTTCTTCAGCAGAGCGAAGGAAAACAGATCCACAGAAAATGGGTATTGGAAGGAAATAGGAGTGACTGAAGCAGTGGTATCTGCATCTGAAAAAGTGGGGATGAAGAAGTACCTTGTGTTCAACCTTGGTGAAGCTCCACAAGGCACTGAAACCAGTTGGGTCATGCAAGAGTTTCATATTTGCTCATCAAGTTTTACCACTGCAAGTACTCGCGGAAGAAGAAAATCTGATCAATGTAGGAGCAAATGGGTTCTGTGCAAAGCCTATGAGAAGAAAAGTTCTGAATCTGAAGAAGGTGTAAATTGCTACAACGATGAGAATGACAGTGGAACTGAGCTTTCATGGCTAGATGAATTTTATATGTCATTAGATGATGATCTTGAAGAAGTTATGAGCCTTCCTAATTAG 603 0.4212 MMASGTLNLPPGFSFSPTDEQLLLHFLYPKTSLPSHPTIIPDLDLSLHDPWHLNGKALSSGNQHYFFSRAKENRSTENGYWKEIGVTEAVVSASEKVGMKKYLVFNLGEAPQGTETSWVMQEFHICSSSFTTASTRGRRKSDQCRSKWVLCKAYEKKSSESEEGVNCYNDENDSGTELSWLDEFYMSLDDDLEEVMSLPN* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2808 200 ProSiteProfiles NAC domain profile. 9 156 IPR003441 GO:0003677|GO:0006355
Pvu2g2808 200 Pfam No apical meristem (NAM) protein 10 125 IPR003441 GO:0003677|GO:0006355
Pvu2g2808 200 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Pvu2g2808 200 PANTHER NAC TRANSCRIPTION FACTOR 56 4 195 - -
Pvu2g2808 200 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 195 - -
Pvu2g2808 200 Gene3D NAC domain 18 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2808 Pvu-Chr2 43793116 43794235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2808 1 159 NAC Transcription Factor Family AT1G69490 37.500 1.17e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu2g2808 NAM 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2808 - - gmx:100779578 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2808 2 43793116 43794235 Pvu2g2808 2 43793116 43794235 ECH