Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2801 ATGAACGAATCTCAAAACACCATTCCTCCCCTATTCAGATGCCCCATAAGTTTAGACTTGTTGGAAGATCCTGTAACCTTGTGCACAGGCCAAACCTATGACAGGTCAAACATAGAAAAATGGCTTGCTGCTGGCAACCTCACATGTCCAGTCACAATGCAAAAGCTTCATGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTTCAACTGGGTCCCCTATTCGACCCTGCCAACCCAGAAACTTCAACTATTGACTCCTTAGCTTCCCTCAAGCGCAACCTTGAATCCCATGAAAGCAGCTTAGAAAACAAGCTCCAAGCACTCAGGAAAATTAGTCTCTTGTCTGATGAGTATTGCTCCTTTAACAAATCATGCTTCCTCCAATTGGACTTCTTACCGCTGCTTTTGGAACTAGTTTTTGGAACTCAAGTATCAATAAATCACATGAACTTCATTGAGCTAGCACTTTGCTGCATTCAGAAATTTCTGCCACTTGGTAGTTTGGAGCCTCTAAATATGATCAAAGATGGGTCTAAATTAGCCATGTTTGTGCTACTAATTGAAAAGGGTACTAACTCGGTTAAGACTAGCTTGTGCCGTGTTATAGAGTCAGCATCATCGTCATCGGAGACAGAAGATTTATGCTATATTCTTGGAAACTCTCCCAAACTAGTGCACGAGATTGTTCAAGTTGTTAACCAAAATTACCAAGTTTCTGGGGATGCAATTAAAGCCATATCAGCACTATGTTCGTTTCAATCCAACAGAGAGAGTTTGGTGAGAGGAGGAGCAATAGAGGGTATCATGAGATACATCTCATCAGAAAGAAGAACCATGGCCCCACTGGCAGTGAGAACAGTTGAGAAACTTATGGCGCTGGAAACTGCTAAAGTGGCATTGGTGAATCACCCCAATGGTGTTGGTACTTTGGTTAATATGGTTTTCAAGGTATCTGATCAAGAATGTAGTGAAAGTGCTGTTGAGGTGCTTTTAGTTGTTTGTGGTGAATTTGAGCGTGCAAGAGAGACAGCCATTGAAAGTGGAGTTTTGACTCGGTTGTTATTGCTCCTGCAGAGTCAGAGTAGTAACAAAACAAAATCAAAGGCAAGATTGCTACTCAAATTGCTAAGATCAGAGTCAAAGCAGGGTTAG 1173 0.4228 MNESQNTIPPLFRCPISLDLLEDPVTLCTGQTYDRSNIEKWLAAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGPLFDPANPETSTIDSLASLKRNLESHESSLENKLQALRKISLLSDEYCSFNKSCFLQLDFLPLLLELVFGTQVSINHMNFIELALCCIQKFLPLGSLEPLNMIKDGSKLAMFVLLIEKGTNSVKTSLCRVIESASSSSETEDLCYILGNSPKLVHEIVQVVNQNYQVSGDAIKAISALCSFQSNRESLVRGGAIEGIMRYISSERRTMAPLAVRTVEKLMALETAKVALVNHPNGVGTLVNMVFKVSDQECSESAVEVLLVVCGEFERARETAIESGVLTRLLLLLQSQSSNKTKSKARLLLKLLRSESKQG* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2801 390 PANTHER WDSAM1 PROTEIN 7 385 IPR045185 GO:0061630
Pvu2g2801 390 SUPERFAMILY ARM repeat 96 383 IPR016024 -
Pvu2g2801 390 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Pvu2g2801 390 SUPERFAMILY RING/U-box 4 76 - -
Pvu2g2801 390 CDD RING-Ubox_PUB 12 54 IPR045210 -
Pvu2g2801 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Pvu2g2801 390 Gene3D - 186 389 IPR011989 -
Pvu2g2801 390 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Pvu2g2801 390 Coils Coil 94 118 - -
Pvu2g2801 390 PANTHER OS02G0542800 PROTEIN 7 385 - -
Pvu2g2801 390 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2801 Pvu-Chr2 43762396 43764197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2801 8 384 U-box Gene Family AT1G49780 30.435 1.66e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2801 - - gmx:100805322 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2801 2 43762396 43764197 Pvu2g2801 2 43762396 43764197 ECH