Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2787 ATGGACACCAACCAGAACACCACCACTAGTGTATTCACAAATGTGAACACCACTTGGAATCTTGAAAAGATGGAAACTAATGAACAACAACATCATCATCATGACCATGACCATATTATCCTCCAAGTCCAAGACCCTCTGGCTTCTGGGATTTGGCCCAATAATTACCCCCACAATCACAACCCCAACCTTCTTCAAATGCATCAAACACCCCCCTCAACAACCTCATCCATAGTACCACCACCCTCCTCCTCCTCCTCAGGGTTCCTTGGAGACATACTAGGTGTTCACAGCATGGAAGAAGATGAAGAACCAGAAGAGGAGCTAGGAGCCATGAAGGAGATGATGTACAAGATAGCTGCTATGCAACCCGTGGACATCGACCCCGCCACCATCCGTAAGCCAAAGAGAAGAAACGTTCGCATCAGCGACGACCCTCAGAGCGTGGCTGCACGCCACAGGAGAGAGAGGATCAGCGAGAAAATCCGCATCCTCCAAAGACTCGTTCCCGGAGGAACCAAAATGGACACTGCTTCCATGCTTGACGAAGCCATTCGCTATGTTAAGTTCCTCAAGAGACAAATCAGGTTGCTCCAATCCATTCCCCACCCTTCCCAACCACCACAATGCATTGGTTTTGCCACCACAAACGCTAACACCTTGCTATTAGCCCCTTCTTGTGATTGGTCTTTTGCACCAAACGTGTTACTCAGCTCCACAGCTGTAACCGCAGCCACGGCCTCTTCCTCCTCCCTGGACATGCCGGGCGGACTCGGATTCGACGGCCGCGGCCACGCTTGTGACGGCTCCTCCAGCTTTAACCAGCATGAGGTAATCAGTGAATAA 846 0.5071 MDTNQNTTTSVFTNVNTTWNLEKMETNEQQHHHHDHDHIILQVQDPLASGIWPNNYPHNHNPNLLQMHQTPPSTTSSIVPPPSSSSSGFLGDILGVHSMEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPHPSQPPQCIGFATTNANTLLLAPSCDWSFAPNVLLSSTAVTAATASSSSLDMPGGLGFDGRGHACDGSSSFNQHEVISE* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2787 281 CDD bHLH_AtIND_like 143 200 - -
Pvu2g2787 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 201 IPR036638 GO:0046983
Pvu2g2787 281 SMART finulus 148 197 IPR011598 GO:0046983
Pvu2g2787 281 Gene3D - 145 203 IPR036638 GO:0046983
Pvu2g2787 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Pvu2g2787 281 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 20 241 IPR045843 GO:0003700|GO:0006355
Pvu2g2787 281 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 20 241 - -
Pvu2g2787 281 Pfam Helix-loop-helix DNA-binding domain 152 191 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2787 Pvu-Chr2 43628586 43629926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2787 111 203 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 81.720 1.50e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu2g2787 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2787 - - aprc:113856609 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2787 2 43628586 43629926 Pvu2g2787 2 43628586 43629926 ECH
Pvu2g2787 2 43628586 43629926 Pvu9g1541 9 21794517 21795480 PCT