Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2780 ATGGTTAGAGACGATCTCTACATCACGGTTCCCAGCTTCTTCCGCTGCCCCATATCCCTCGATGTCATGAAATCCCCTGTCAGCCTCTCCACCGGCGTTACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACAACGGCAACAACACGTGTCCCGCCACCATGCAGGTTCTCCAAACCAAAGAATTTGTTCCAAACCGAACCTTACAGAGGCTCATCCAGATCTGGTCCGACTCCCTCCACCACCCACTCCACTCGCCTCACTCCCCTACTTCCACCCACTCCTTATCCCTCCCCTCCAAGAACCAAATCCTCCTCGCTATCTCCGACTTACAGACTCGCGCCCAGAACCGCATCGACTCGCTCGCCAAAATCGCGCGGTTCGCGCAAGATTCCGAGGAGAACCGCGATTTTCTCGTCAGAACGGAATGCTTCGTGCCGCTGCTGGTTGGCTTCCTGGACAATGTCAATGGCAGCGTCGAGTTCCTCGAACAGGTCGTTACGGCGTTGGATTTGGTTATCGGAAAAATGGAAGATCGTGAGGGGCTGAAAAACTTGATACTGAAGAGGCAGGGCGAGGGAGAAAAGCAGAGCCTAGATTCTCTGTTTATCGCTCTCCAACAAGGGAGCCATGCTGCACAAATAGCATCGGTTAGGGTTTTGACTTCGGTCGCCGTGGACGTGGAATCGAAGCTGTTGATAGCGGAGAAGGAAGGTTTAGTGTCCGAATTGCTGAAACTAATCACGCCGGAGAAAGATCCGGATCTAATTGACAACTGTTTGTCGTGCCTGGTGGCGATTTCGTCTCCGAGACGGAGCAAGATGAAGCTGGTGCGTCTGGGAGCGGTTAAGGTGTTCTCAAAGCTTCTTTTGGCTTCGAACATGAGCGTGTCGGTGACGGAGAAGGTTCTGAAGCTGGTGGAAACGGTGTCGTCTACGAAGGAAGGGAGGTCGGAGATATGCGAGGATTCAGCGTGCGTGGCGGCTATAGTGAATAAGGTGCTGAAAGTTTCGAGCGTGGCAACGGAACACGCCGTTACGACGCTGTGGAGCGTGTGTTATCTGTTTCGGGATCAGACGGCACAAGAGGCCGTTACGAATGCTAACGGCTTGACCAAGATTCTGCTTCTGATGCAGAGTAATTGCTCGCCGCAAGTGCGCCAAATGTCTGTGGATTTGCTCAAAATATTTCGGGTTAATTCTAAGTCGTGTCTTTCATCTTATGACACCAAGACCACTCATATTATGCCCTTTTGA 1257 0.5251 MVRDDLYITVPSFFRCPISLDVMKSPVSLSTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSDSLHHPLHSPHSPTSTHSLSLPSKNQILLAISDLQTRAQNRIDSLAKIARFAQDSEENRDFLVRTECFVPLLVGFLDNVNGSVEFLEQVVTALDLVIGKMEDREGLKNLILKRQGEGEKQSLDSLFIALQQGSHAAQIASVRVLTSVAVDVESKLLIAEKEGLVSELLKLITPEKDPDLIDNCLSCLVAISSPRRSKMKLVRLGAVKVFSKLLLASNMSVSVTEKVLKLVETVSSTKEGRSEICEDSACVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDQTAQEAVTNANGLTKILLLMQSNCSPQVRQMSVDLLKIFRVNSKSCLSSYDTKTTHIMPF* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2780 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
Pvu2g2780 418 SUPERFAMILY ARM repeat 118 402 IPR016024 -
Pvu2g2780 418 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 418 - -
Pvu2g2780 418 Gene3D - 106 290 IPR011989 -
Pvu2g2780 418 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Pvu2g2780 418 SUPERFAMILY RING/U-box 5 78 - -
Pvu2g2780 418 CDD RING-Ubox_PUB 14 56 IPR045210 -
Pvu2g2780 418 PANTHER WDSAM1 PROTEIN 4 418 IPR045185 GO:0061630
Pvu2g2780 418 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Pvu2g2780 418 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Pvu2g2780 418 Gene3D - 291 397 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2780 Pvu-Chr2 43523418 43525298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2780 1 418 U-box Gene Family AT5G64660 52.448 1.39e-144 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2780 - - vra:106764800 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2780 2 43523418 43525298 Pvu2g2780 2 43523418 43525298 ECH
Pvu9g1531 9 21666543 21668545 Pvu2g2780 2 43523418 43525298 ECH
Pvu2g2780 2 43523418 43525298 Pvu9g1531 9 21666543 21668545 PCT