Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2772 ATGTATGCTTCAACTTCCTTCACTACGCAATTGCTCCGTGACCTTCTCATGGACTCAAGCTCAAGAAAGCTACTCCTTCAAGAACCTCTTCATCAACAAGACTTGACCAAATCCCCAGATTCCATTAGTTACAACTCAACCGACTCGTATTTCAAAGCTCATGACTTCAACGCAAATGTTGTCATGATCCTCGCAGTCCTTCTGTGTGCTGTTATTTGCTCACTCGGCTTGAACTCCATCATAAAGTGTGTCCTGAGATGCTCAAACATAGTCATCAACGACCCTTCAATTATGAGCAACAGCCCTAGTGTGAGCTACAGCCCTTCACCACGATTGGCCAACACAGGAATCAAGAAGAAAGCCCTCAAGACTTTTCCTACTGTGAGCTACTCAACCGAGTTGAAACTCCCAGGTTTGGACACAGAGTGTGTGATATGCCTCTCAGAGTTTGTCAATGGTGATAAGGTACGCATTTTGCCAAAATGCAACCATGGTTTCCACGTTCGTTGCATTGACAAATGGCTGAGTTCACACTCATCATGCCCCAAGTGCAGACAGTGCCTCATTGAATGCAAGAAAATTGTTGGATCCCAACCACTAGTTCCAGAAACCATTATAAGGATCCAACCACTTGAACCTGAAGGTTTGGAGCGTAACTATAGGGAAGTATGCTAG 675 0.4474 MYASTSFTTQLLRDLLMDSSSRKLLLQEPLHQQDLTKSPDSISYNSTDSYFKAHDFNANVVMILAVLLCAVICSLGLNSIIKCVLRCSNIVINDPSIMSNSPSVSYSPSPRLANTGIKKKALKTFPTVSYSTELKLPGLDTECVICLSEFVNGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIECKKIVGSQPLVPETIIRIQPLEPEGLERNYREVC* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2772 224 SUPERFAMILY RING/U-box 121 191 - -
Pvu2g2772 224 Pfam Ring finger domain 142 185 IPR001841 -
Pvu2g2772 224 SMART ring_2 143 184 IPR001841 -
Pvu2g2772 224 CDD RING-H2_PA-TM-RING 142 185 - -
Pvu2g2772 224 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 224 - -
Pvu2g2772 224 PANTHER RING-H2 FINGER PROTEIN ATL78 1 224 IPR044602 GO:0016567|GO:0016740
Pvu2g2772 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 189 IPR013083 -
Pvu2g2772 224 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2772 Pvu-Chr2 43437470 43438144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2772 56 189 C3H Transcription Factor Family AT3G10910 51.493 3.23e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2772 K19040 - gmx:100527126 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2772 2 43437470 43438144 Pvu9g1526 9 21623693 21624373 PCT