Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu2g2757 | ATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGATGTAGATTCCACCAAGAAGAAGAAGGAGATCACCGACAAGGTCGAGAGAAGTTACAGGAAGCGCGACGTCGACGACGATCTCCACGCCGACGAGAGGAGGAGCAAGAGGAGGGGCGACGACGACAACGGTGGTTCCAAGAAAGATCGTGACAGAGACAGGGATAGGGACAAAGACCGGGAACGTGACCGTTCCTCCGGCCGTCACAGGAGCGAGAGGGAGAGAGATGGAGAGAAGAAAGAGAGGGATAAGGATAGAGAGAGGAGGGATAAGGATAAGGATAAGGATAAGGACAAGGATAGGAGAGATCGTGACAGGGATAAGGAAAAGGAGCGCGAGAGAAGAGAGAGGGATAAGGAGCGAGAGGAGAGAGAGAGATCCAGAAGGAGCAGGAGTCGCTCCGAGAGAGAGAGAGGAGACAGAGACCGGGAGCGAGATTTCGAAATGCGCGATGGACGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCGGAGGCAGATCCAGAAAGGGACCAGAGAACTGTTTTTGCTTACCAGATGCCATTAAAAGCAACAGAGAGAGATGTGTACGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGACGTCCGTCTGATCATGGATAGGAATTCAAGACGATCCAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCTATTGCTCTCTCTGGTCAACTTCTTCTTGGACAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATGCTTCTGGTGGAGCGGCTGGTGTAGCTGGTCCTTATGGAGCTGTGGACAGAAAATTGTATGTGGGAAATCTTCACTTCAACATGACTGAGAGTCAGCTACGGGAGATTTTTGAGCCATTTGGTCCTGTTGAAGTTGTCCAACTGCCTCTTGACTTGGAAACGGGCCACTGCAAGGGTTTTGGGTTTGTTCAATTTACCCATCTTGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTCTCATGTGTAACGGATCATGTTGGAAGCCAAGATACCACTGCAAAATCTGCAGACTTAGATGACGACGAAGGTGGATTGACTTTAAATGCTCACTCAAGAGCCTTGCTTATGCAGAGGCTGGCTGGTGCTGACATTTCTGCAAGCATGGGTATGTCTGTTGTGAATGGCTCTGTTCCTGCTCAGCAGACTGTTAGCTTACCTATTGGTGCACCAGTTCTGCCTGCACAAGTTATGCCTACCCCAGTGGTAGAACCTGTAGGAAGCCCCAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCTACCACCGAGTCGGAACCAGATTTTGATATAGACATTAAAGAAGATGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTCTATTTGCGATTTGAAACAGTGGAAGCATCAAGTGCTGCTCAACGTGCAATGCACATGAGATGGTTTGCACGCAGGTTAATTTCAGCAATCTTCATGCAACCACAAATATATGAAGCCAAGTTTAAAGGGGAGTGA | 1644 | 0.472 | MDFDEYEYLEKTVEEDVDSTKKKKEITDKVERSYRKRDVDDDLHADERRSKRRGDDDNGGSKKDRDRDRDRDKDRERDRSSGRHRSERERDGEKKERDKDRERRDKDKDKDKDKDRRDRDRDKEKERERRERDKEREERERSRRSRSRSERERGDRDRERDFEMRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADISASMGMSVVNGSVPAQQTVSLPIGAPVLPAQVMPTPVVEPVGSPSECLLLKNMFDPTTESEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLRFETVEASSAAQRAMHMRWFARRLISAIFMQPQIYEAKFKGE* | 548 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu2g2757 | 547 | SMART | rrm1_1 | 189 | 261 | IPR000504 | GO:0003723 | |
Pvu2g2757 | 547 | SMART | rrm1_1 | 291 | 364 | IPR000504 | GO:0003723 | |
Pvu2g2757 | 547 | SMART | rrm1_1 | 455 | 532 | IPR000504 | GO:0003723 | |
Pvu2g2757 | 547 | Gene3D | - | 286 | 382 | IPR012677 | - | |
Pvu2g2757 | 547 | TIGRFAM | SF-CC1: splicing factor, CC1-like family | 75 | 544 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Pvu2g2757 | 547 | CDD | RRM1_RBM39_like | 189 | 261 | - | - | |
Pvu2g2757 | 547 | MobiDBLite | consensus disorder prediction | 14 | 160 | - | - | |
Pvu2g2757 | 547 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 383 | 472 | IPR029123 | - | |
Pvu2g2757 | 547 | Gene3D | - | 115 | 274 | IPR012677 | - | |
Pvu2g2757 | 547 | SUPERFAMILY | RNA-binding domain, RBD | 290 | 537 | IPR035979 | GO:0003676 | |
Pvu2g2757 | 547 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 477 | 530 | IPR000504 | GO:0003723 | |
Pvu2g2757 | 547 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 292 | 362 | IPR000504 | GO:0003723 | |
Pvu2g2757 | 547 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 195 | 257 | IPR000504 | GO:0003723 | |
Pvu2g2757 | 547 | CDD | RRM3_RBM39_like | 453 | 535 | - | - | |
Pvu2g2757 | 547 | CDD | RRM2_RBM23_RBM39 | 292 | 364 | - | - | |
Pvu2g2757 | 547 | Gene3D | - | 450 | 547 | IPR012677 | - | |
Pvu2g2757 | 547 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 188 | 265 | IPR000504 | GO:0003723 | |
Pvu2g2757 | 547 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 547 | - | - | |
Pvu2g2757 | 547 | PANTHER | CC1-LIKE SPLICING FACTOR | 1 | 547 | - | - | |
Pvu2g2757 | 547 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 290 | 368 | IPR000504 | GO:0003723 | |
Pvu2g2757 | 547 | Coils | Coil | 120 | 152 | - | - | |
Pvu2g2757 | 547 | SUPERFAMILY | RNA-binding domain, RBD | 181 | 274 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu2g2757 | Pvu-Chr2 | 43322959 | 43329824 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu2g2757 | 262 | 363 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 35.922 | 3.51e-08 | 54.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu2g2757 | K13091 | - | gmx:100793461 | 714.916 |