Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2757 ATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGATGTAGATTCCACCAAGAAGAAGAAGGAGATCACCGACAAGGTCGAGAGAAGTTACAGGAAGCGCGACGTCGACGACGATCTCCACGCCGACGAGAGGAGGAGCAAGAGGAGGGGCGACGACGACAACGGTGGTTCCAAGAAAGATCGTGACAGAGACAGGGATAGGGACAAAGACCGGGAACGTGACCGTTCCTCCGGCCGTCACAGGAGCGAGAGGGAGAGAGATGGAGAGAAGAAAGAGAGGGATAAGGATAGAGAGAGGAGGGATAAGGATAAGGATAAGGATAAGGACAAGGATAGGAGAGATCGTGACAGGGATAAGGAAAAGGAGCGCGAGAGAAGAGAGAGGGATAAGGAGCGAGAGGAGAGAGAGAGATCCAGAAGGAGCAGGAGTCGCTCCGAGAGAGAGAGAGGAGACAGAGACCGGGAGCGAGATTTCGAAATGCGCGATGGACGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCGGAGGCAGATCCAGAAAGGGACCAGAGAACTGTTTTTGCTTACCAGATGCCATTAAAAGCAACAGAGAGAGATGTGTACGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGACGTCCGTCTGATCATGGATAGGAATTCAAGACGATCCAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCTATTGCTCTCTCTGGTCAACTTCTTCTTGGACAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATGCTTCTGGTGGAGCGGCTGGTGTAGCTGGTCCTTATGGAGCTGTGGACAGAAAATTGTATGTGGGAAATCTTCACTTCAACATGACTGAGAGTCAGCTACGGGAGATTTTTGAGCCATTTGGTCCTGTTGAAGTTGTCCAACTGCCTCTTGACTTGGAAACGGGCCACTGCAAGGGTTTTGGGTTTGTTCAATTTACCCATCTTGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTCTCATGTGTAACGGATCATGTTGGAAGCCAAGATACCACTGCAAAATCTGCAGACTTAGATGACGACGAAGGTGGATTGACTTTAAATGCTCACTCAAGAGCCTTGCTTATGCAGAGGCTGGCTGGTGCTGACATTTCTGCAAGCATGGGTATGTCTGTTGTGAATGGCTCTGTTCCTGCTCAGCAGACTGTTAGCTTACCTATTGGTGCACCAGTTCTGCCTGCACAAGTTATGCCTACCCCAGTGGTAGAACCTGTAGGAAGCCCCAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCTACCACCGAGTCGGAACCAGATTTTGATATAGACATTAAAGAAGATGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTCTATTTGCGATTTGAAACAGTGGAAGCATCAAGTGCTGCTCAACGTGCAATGCACATGAGATGGTTTGCACGCAGGTTAATTTCAGCAATCTTCATGCAACCACAAATATATGAAGCCAAGTTTAAAGGGGAGTGA 1644 0.472 MDFDEYEYLEKTVEEDVDSTKKKKEITDKVERSYRKRDVDDDLHADERRSKRRGDDDNGGSKKDRDRDRDRDKDRERDRSSGRHRSERERDGEKKERDKDRERRDKDKDKDKDKDRRDRDRDKEKERERRERDKEREERERSRRSRSRSERERGDRDRERDFEMRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADISASMGMSVVNGSVPAQQTVSLPIGAPVLPAQVMPTPVVEPVGSPSECLLLKNMFDPTTESEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLRFETVEASSAAQRAMHMRWFARRLISAIFMQPQIYEAKFKGE* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2757 547 SMART rrm1_1 189 261 IPR000504 GO:0003723
Pvu2g2757 547 SMART rrm1_1 291 364 IPR000504 GO:0003723
Pvu2g2757 547 SMART rrm1_1 455 532 IPR000504 GO:0003723
Pvu2g2757 547 Gene3D - 286 382 IPR012677 -
Pvu2g2757 547 TIGRFAM SF-CC1: splicing factor, CC1-like family 75 544 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pvu2g2757 547 CDD RRM1_RBM39_like 189 261 - -
Pvu2g2757 547 MobiDBLite consensus disorder prediction 14 160 - -
Pvu2g2757 547 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 383 472 IPR029123 -
Pvu2g2757 547 Gene3D - 115 274 IPR012677 -
Pvu2g2757 547 SUPERFAMILY RNA-binding domain, RBD 290 537 IPR035979 GO:0003676
Pvu2g2757 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 477 530 IPR000504 GO:0003723
Pvu2g2757 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 362 IPR000504 GO:0003723
Pvu2g2757 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 257 IPR000504 GO:0003723
Pvu2g2757 547 CDD RRM3_RBM39_like 453 535 - -
Pvu2g2757 547 CDD RRM2_RBM23_RBM39 292 364 - -
Pvu2g2757 547 Gene3D - 450 547 IPR012677 -
Pvu2g2757 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 265 IPR000504 GO:0003723
Pvu2g2757 547 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 547 - -
Pvu2g2757 547 PANTHER CC1-LIKE SPLICING FACTOR 1 547 - -
Pvu2g2757 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 368 IPR000504 GO:0003723
Pvu2g2757 547 Coils Coil 120 152 - -
Pvu2g2757 547 SUPERFAMILY RNA-binding domain, RBD 181 274 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2757 Pvu-Chr2 43322959 43329824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2757 262 363 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 3.51e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2757 K13091 - gmx:100793461 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2757 2 43322959 43329824 Pvu9g1513 9 21425978 21433174 ECH
Pvu2g2757 2 43322959 43329824 Pvu2g2757 2 43322959 43329824 ECH
Pvu2g2757 2 43322959 43329824 Pvu9g1513 9 21425978 21433174 PCT