Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2709 ATGGATGCTTCATCCTCACAGTTTGTTTCCACAAGAAGAATGGAAGTGTATGATCCTATCCACCAACTTAGCATGTGGGAAGAAAATTTCAAAAGTAATGTTAATACTTTAACTGCATCCACCTCCATAATTGAAGAGCTGGACATGAAGTTAGATAATCAAGTTCAGGTGCAATCAGAGGAGATTTCTCATGGAATATTTGGAACATCTGTGAACTACAACCAAGATCATAATAGACTAGCTGATAAGACACAAAGGCGTCTTGCACAAAATCGAGAGGCTGCTCGGAAGAGTCGTTTGAGGAGAAAGGCATACGTTCAGCAGTTGGAATCATGTCGTTTGAAGCTGATGCATTTAGAGCAAGAGGTAGATCATGCTAAACAACAGGGATTGTATATTGGTGACGGATTGGGTTCTAATAATTTGGGTTTTGCTGGCTCTGTAAATTCAGGAATAACAATTTTTAAGATGGAGTATGAACATTGGGTAGAGGAGCAAAATAGACATATCTTGGAAATGAGAACTGCTTTAAGTTCTCATATAGGTGACATACAACTGGGGAAACTTGTAAAAAGCATAATGGACCACTACTCCAAACTCTTTAGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTCTACGTTATGTCTGGCATGTGGATGACAACAGCTGAAAGATTTTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTAAAGGTTCTGGTCCCTCTGAGTGAACCTTTGACAGAGCAACAACGGTTTGATACATATGGCCTAGAAAAATCATGCCAACAAGCAGAAGATGCCCTTTCACAAGGTATGGAAAAACTTCAGCAAATGCTTGCTGACAGTGTTGGGCCAGGACACCTAGTTGAAGGAACTCACATTCCACAGATGGACACTGCAATGGAGAGGATGGAAGCTCTGGTGAGCTTTGTGAATCAGGCTGATCATCTACGACAAGAAACCTTGCGGCAAATGTATCGAATACTTAGCATACGTGAGATTGGTCAGTTTCTGGTTGTTCTAGGAGAATATTTTCAACGCTTAAGGGCTTTGAGCAAACTTTGGGCTAATCGTTCTCAAGAATCACTTGCTTAG 1107 0.4101 MDASSSQFVSTRRMEVYDPIHQLSMWEENFKSNVNTLTASTSIIEELDMKLDNQVQVQSEEISHGIFGTSVNYNQDHNRLADKTQRRLAQNREAARKSRLRRKAYVQQLESCRLKLMHLEQEVDHAKQQGLYIGDGLGSNNLGFAGSVNSGITIFKMEYEHWVEEQNRHILEMRTALSSHIGDIQLGKLVKSIMDHYSKLFSMKSAAAKADVFYVMSGMWMTTAERFFLWIGGFRPSELLKVLVPLSEPLTEQQRFDTYGLEKSCQQAEDALSQGMEKLQQMLADSVGPGHLVEGTHIPQMDTAMERMEALVSFVNQADHLRQETLRQMYRILSIREIGQFLVVLGEYFQRLRALSKLWANRSQESLA* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2709 368 Pfam bZIP transcription factor 82 111 IPR004827 GO:0003700|GO:0006355
Pvu2g2709 368 Pfam Seed dormancy control 170 244 IPR025422 GO:0006351|GO:0043565
Pvu2g2709 368 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 86 101 IPR004827 GO:0003700|GO:0006355
Pvu2g2709 368 PANTHER TRANSCRIPTION FACTOR TGA9 1 366 - -
Pvu2g2709 368 Gene3D - 81 131 - -
Pvu2g2709 368 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 81 111 IPR004827 GO:0003700|GO:0006355
Pvu2g2709 368 SMART brlzneu 79 139 IPR004827 GO:0003700|GO:0006355
Pvu2g2709 368 ProSiteProfiles DOG1 domain profile. 152 362 IPR025422 GO:0006351|GO:0043565
Pvu2g2709 368 SUPERFAMILY Leucine zipper domain 83 123 IPR046347 GO:0003700|GO:0006355
Pvu2g2709 368 Coils Coil 265 285 - -
Pvu2g2709 368 Coils Coil 102 129 - -
Pvu2g2709 368 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2709 Pvu-Chr2 42954879 42962578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2709 1 365 Calmodulin-binding Proteins AT5G65210 61.518 4.89e-166 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pvu2g2709 DOG1 2.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2709 K14431 - gmx:100780003 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2709 2 42954879 42962578 Pvu2g2709 2 42954879 42962578 ECH
Pvu2g2709 2 42954879 42962578 Pvu1g2576 1 50739003 50743695 PCT