Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2707 ATGACCGATCCTTCTCCTCTTATCCCTCCATCACCGGTCACTGACATCGACCTTGAAGCCGCTCCCTCCCAACAAATTCAATGCCGGATTTGTCTTGAAACTGATGGTAGACATTTCATTGCCCCTTGCAAATGCAGAGGGACATCAAAGTATGTACATCGAGAGTGTTTGGATCATTGGCGAGCGGTTAAGGAAGGGTTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCATACCATTTGCGTGTTCTTGATGCTTACAGAAAATGGCGTACTTTCAAATTTTGTTTTTTTGTAACCAGAGACATTTTGTTCATATTTCTGGCTGTACAGCTTGTCATTGCTGCACTGGCCTATTTGGCTTATCTAATAGATGGCTACCAGCACTACAGGCTTCGTCTTGTTTGGGGTTTTGATCATGTGTTGAGCTTTTACTATATATGTGGAGAACTGTTGTTTTTTGTGTTGCTTGGCCTCTCTGGATGCTTTCTCACTTGTTCTGATGAAAGAGTTCGCAATGATTTGGGTCAGCCTTGTCGAGAAATATATCTTTGTTGCTGTCAACCTGGAGTTTGTACCGACTATAATTATCGAGGTACTCCTAGCATGTGGCTTGAATGTACTTCTTGCTTTGAGAGTTGTGGAAACATGGAAACTGAATGTTGTGGTTGTATGAGAGGTTCTGAGGAAACACAGATACCATTATTATTCATAATGACTTTGATTTTTCTAGTACTCTTTGCTGTAATTGGGATATTTTACAGTGTATTAGTGGCTACAATGGTAGCACAACGGATATGGCAGCGTCATTATCACATACTTGCAAAAAGGATGCTAACAAAGGAGTATGTCGTTGAAGACATTGATGGAGAGATAACAGGGTCTGATTGGTCTCCTCCATCCATCCCACCAGAGCATGTACAGCACCTGAAAACATTGGGCCTCCTATGA 951 0.4227 MTDPSPLIPPSPVTDIDLEAAPSQQIQCRICLETDGRHFIAPCKCRGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVLDAYRKWRTFKFCFFVTRDILFIFLAVQLVIAALAYLAYLIDGYQHYRLRLVWGFDHVLSFYYICGELLFFVLLGLSGCFLTCSDERVRNDLGQPCREIYLCCCQPGVCTDYNYRGTPSMWLECTSCFESCGNMETECCGCMRGSEETQIPLLFIMTLIFLVLFAVIGIFYSVLVATMVAQRIWQRHYHILAKRMLTKEYVVEDIDGEITGSDWSPPSIPPEHVQHLKTLGLL* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2707 316 SMART ringv_2 27 76 IPR011016 GO:0008270
Pvu2g2707 316 ProSiteProfiles Zinc finger RING-CH-type profile. 20 82 IPR011016 GO:0008270
Pvu2g2707 316 CDD RING_CH-C4HC3_MARCH 28 76 - -
Pvu2g2707 316 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 5 316 - -
Pvu2g2707 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 87 IPR013083 -
Pvu2g2707 316 SUPERFAMILY RING/U-box 24 80 - -
Pvu2g2707 316 Pfam RING-variant domain 28 75 IPR011016 GO:0008270
Pvu2g2707 316 PANTHER BNAA04G12620D PROTEIN 5 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2707 Pvu-Chr2 42933366 42936868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2707 5 316 C3H Transcription Factor Family AT2G22120 73.186 1.50e-163 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2707 - - gmx:100791777 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2707 2 42933366 42936868 Pvu2g2707 2 42933366 42936868 ECH
Pvu2g2707 2 42933366 42936868 Pvu1g2577 1 50754306 50760471 PCT