Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2705 ATGAGAAGGTCTGTGTGTGAGTTATTGTATGAGCTTTATGCCAAGACAATAGTCCTTGTAACATACATGCTAATACAACTCATCCTTATCATTCGCTACCTTAAATCAAATACGCCTCCAATATCAACCACCCAATACCTCAGTTTCATCGAACAGAAGAACCCTGCCATTCGTTGCACCACAAGACTCAAGGCTGAACACATAGACTGCAGAGTGTGTCTCTCTGAATTCCAGGAGGGGGAGAAGGTGAGGAACCTCAACTGCAGACACACTTTTCACAAGGATTGCCTTGACCAGTGGTTGCAGCAATACTGTGCCACTTGCCCACTTTGCAGGCACAAGGTCTTGCCAGATCATGTTGTGGCCAACTACAACCTCCTTCAAAATCAGGTACAAGAAGAAGAAGAAGAGTATGATGGCAATGATCACCAACTCATCTTTTTGTTATCTGCATTAAGGGGTGGTAGCACTTTGCACACATATCTTTGA 489 0.4397 MRRSVCELLYELYAKTIVLVTYMLIQLILIIRYLKSNTPPISTTQYLSFIEQKNPAIRCTTRLKAEHIDCRVCLSEFQEGEKVRNLNCRHTFHKDCLDQWLQQYCATCPLCRHKVLPDHVVANYNLLQNQVQEEEEEYDGNDHQLIFLLSALRGGSTLHTYL* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2705 162 CDD mRING-H2-C3H2C2D_ZSWM2 70 112 - -
Pvu2g2705 162 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Pvu2g2705 162 SUPERFAMILY RING/U-box 50 123 - -
Pvu2g2705 162 PANTHER - 4 157 - -
Pvu2g2705 162 Pfam Ring finger domain 69 112 IPR001841 -
Pvu2g2705 162 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 4 157 - -
Pvu2g2705 162 Coils Coil 124 144 - -
Pvu2g2705 162 SMART ring_2 70 111 IPR001841 -
Pvu2g2705 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 117 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2705 Pvu-Chr2 42922246 42922892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2705 69 122 C3H Transcription Factor Family AT1G15100 57.407 4.97e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2705 K16282 - gmx:102669811 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2705 2 42922246 42922892 Pvu2g2705 2 42922246 42922892 ECH
Pvu2g2705 2 42922246 42922892 Pvu1g2579 1 50768039 50768536 PCT