Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2682 ATGAAGAGACTTGGCAGCTCCGATTCTCTGGGTGCTCTCATGACCATTTGTCCACCAACAGACGAACACAGTCCGAGGAACAACCACGTGTATGGCAGGGAGTTCCAGTCTATGCTGGAAGGACTAGACGATGAAGGGTGTGTGGAGGAACCAGGACACCACGCTGAGAAGAAACGAAGACTAAGCGTGGATCAGGTGAAGGCTTTGGAGAAGAACTTCGAAGTAGAGAACAAACTCGAACCTGACAGAAAGGTGAAGCTGGCACAAGAACTTGGCTTGCAACCAAGACAAGTTGCGGTTTGGTTCCAAAACCGTCGAGCCAGGTGGAAGACAAAGCAATTGGAAAGAGACTATGGAGTCCTCAAAGCCAATTATGATTCCCTCAAACTTAACTACGACACCCTCCAACAAGACAACGAAGCCTTACTCAAAGAGATAAAGGAATTGAAATCAAGGTTGCTGCTGCAAGAAGAGAGCAACACTGAAAGCGATGTTTCAGTGAAGGAAGAGATGATAACACTGCAAGATAGTAACCCACTTTGTGAAACCGCCATTCCTGGATCCGAGTCCAAGGAGTTGAGTTACGAATGCTTTAACAAGAGTGATGAGGTTTTAGGTTTCAAAGACGGGTCTTCCGACAGCGACTCCAGCGCGATCTTGAACGAAGAGAATGCCAACAACAACGACAACAGTCCCAACAACGCCACGATTTCGTCTTCTGGGGCTATGCAAAGTCAGAGCTTTTTATCGTCGTCTTCTCCGATGAACTGTTTCCAGTTCCAGAAACAGTTTCCGACGCAGTACGTGAAGATGGAGGAGCATAATTTTCTGAGCGCGGACGAGGCGTGCAATTTCTTTTCGGATGAACAAGCGCCCACGCTGCAGTGGTACTGTTCAGAGGAGTGGAGTTAA 912 0.4781 MKRLGSSDSLGALMTICPPTDEHSPRNNHVYGREFQSMLEGLDDEGCVEEPGHHAEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKLNYDTLQQDNEALLKEIKELKSRLLLQEESNTESDVSVKEEMITLQDSNPLCETAIPGSESKELSYECFNKSDEVLGFKDGSSDSDSSAILNEENANNNDNSPNNATISSSGAMQSQSFLSSSSPMNCFQFQKQFPTQYVKMEEHNFLSADEACNFFSDEQAPTLQWYCSEEWS* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2682 303 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Pvu2g2682 303 SMART HOX_1 55 116 IPR001356 GO:0003677
Pvu2g2682 303 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 295 - -
Pvu2g2682 303 SUPERFAMILY Homeodomain-like 38 114 IPR009057 -
Pvu2g2682 303 Coils Coil 125 159 - -
Pvu2g2682 303 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Pvu2g2682 303 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Pvu2g2682 303 MobiDBLite consensus disorder prediction 1 28 - -
Pvu2g2682 303 MobiDBLite consensus disorder prediction 210 248 - -
Pvu2g2682 303 CDD homeodomain 57 113 IPR001356 GO:0003677
Pvu2g2682 303 MobiDBLite consensus disorder prediction 209 248 - -
Pvu2g2682 303 Gene3D - 52 119 - -
Pvu2g2682 303 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Pvu2g2682 303 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Pvu2g2682 303 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Pvu2g2682 303 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 295 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2682 Pvu-Chr2 42653295 42655789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2682 1 299 Homeobox Transcription Factor Family AT2G22430 47.840 5.03e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu2g2682 Homeodomain 3.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2682 K09338 - gmx:100796213 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2682 2 42653295 42655789 Pvu2g2682 2 42653295 42655789 ECH
Pvu2g2682 2 42653295 42655789 Pvu1g2623 1 51124934 51127053 PCT