Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2680 ATGCTTCCTCAGCCTAAAATCCCAGAATCTCACCATGGTACCCCAGCAGCTTCCCCTTTGAAATCTGTGAAGTTACCCATATATCCCGTAGAAGAACATCATAAATATGTTTTTCCACTAGCGTGGATTGTGGTGGCGTGCATAGTTGGCGTGTTCATGTTTCTGTTCACTGTGTTCACACTCATAAGGTACTTTTACTCCAGGAGATATAACCGCAGCCCAAATGGAACAAGAGACACGCCCATACTGTTCGATTTGAACGGAGATTCTCCCACTTCGGATAACGATAATGACGTGGACCAAGACGACTTGGCGGCTGTCCACCATGTATGGTACATCCGCACCGTCGGTCTCCAACAATCGCTTATAGACTCCATCACCGTCTTCAAATACAGAAAAAACGAGGGAATCATAGACAGCTCCGAATGTTCCGTGTGCCTCGGAGAGTTCGAACACGACGACACTCTCAGGCTGTTGCCCAAGTGCAGCCACGCGTTCCACGTGCCTTGCATTGACACGTGGCTCCGGTCCCACAAAAACTGCCCCCTGTGCCGCGCACCCGTGGTCTGCGATGAAACTGGAGCCGTTGATCAGAATGTTCAGATGGATTCGAGCGTGTCTGATCATCAGAGTCAGAATCATGTGGTTCAGGTGGAGGATTCTGATGACGGAGAGGGATTAGAAGGTGGTGGTGGTGGTTCTGGTGAGTCCTCTGGTGGAATAGAAACACAGCCTCTGAGGAGATCGGTTTCGATGGGTTTTTCTTCTGCTTCAAATTCAATGGTGTCTCGTGATGTGGGGGTGGATATAGACACCCCTTATGGCGAAAAAGTGAGTTCGACTAACAAGGGCATGACTCGTATGAGTATTATTGAGAAACATGGAAGTGGGAGTTCGTGTTCGAGTTCAAGTTCAAGTTCAAGTACCATTCACAAGTTGGCTTCAGTTGGACGTGCGTTGCAAAAGGGTCCAGTCTCAATGAGACGATCGTTTTCACATAACAGGAAATTTTTGTTCTCCACACACTCCAGGAGTCAGAGTTCTACTCTTCCAATATAA 1059 0.4806 MLPQPKIPESHHGTPAASPLKSVKLPIYPVEEHHKYVFPLAWIVVACIVGVFMFLFTVFTLIRYFYSRRYNRSPNGTRDTPILFDLNGDSPTSDNDNDVDQDDLAAVHHVWYIRTVGLQQSLIDSITVFKYRKNEGIIDSSECSVCLGEFEHDDTLRLLPKCSHAFHVPCIDTWLRSHKNCPLCRAPVVCDETGAVDQNVQMDSSVSDHQSQNHVVQVEDSDDGEGLEGGGGGSGESSGGIETQPLRRSVSMGFSSASNSMVSRDVGVDIDTPYGEKVSSTNKGMTRMSIIEKHGSGSSCSSSSSSSSTIHKLASVGRALQKGPVSMRRSFSHNRKFLFSTHSRSQSSTLPI* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2680 352 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Pvu2g2680 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 193 IPR013083 -
Pvu2g2680 352 CDD RING-H2_PA-TM-RING 142 185 - -
Pvu2g2680 352 SMART ring_2 143 184 IPR001841 -
Pvu2g2680 352 SUPERFAMILY RING/U-box 127 191 - -
Pvu2g2680 352 Pfam Ring finger domain 142 185 IPR001841 -
Pvu2g2680 352 MobiDBLite consensus disorder prediction 203 243 - -
Pvu2g2680 352 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 21 344 IPR044675 -
Pvu2g2680 352 PANTHER RING-H2 FINGER PROTEIN ATL54 21 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2680 Pvu-Chr2 42618275 42620028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2680 40 189 C3H Transcription Factor Family AT1G72220 46.753 5.11e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2680 - - gmx:102663026 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2680 2 42618275 42620028 Pvu1g2626 1 51146820 51147859 PCT