Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2648 ATGGCAATAACAACTTTTAGTAGTACCTCTGCTGCACAATGGGGAATTCATCCTCGGCTATTAGTAAGATCCAGTATTACAGGAAAGGTTGCATCATCCAGCCACAATGCTACCAGCAGGGTAAGCTTCATGGCCGCATCAAGTTCAAGCTTTTTTTCTCGAGATTCCACACTACTCAGTGTGGGTGCACCCCAAACATGTAGTCGTCGCAAGGGGTCAAGGTTGATTGTTAGAGCTGATGCACAGGATTATTATTCTGTCCTTGGGGTTTCAAGAAATGCTAGCAAATCTGAAATTAAGAGCGCGTACCGGAAGCTTGCCCGGAATTATCATCCGGATGTCAACAAAGAACCTGGAGCTGAACAGAAGTTTAAAGATATTAGCAACGCATATGAGGTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGGGATTTCAGCAATCCATTTGATCTGTTCGAATCACTGTTTGAGGGCATGAATCGCGGTGCAGGTTCCAGAGGTTCTTGGAATGGTGCAATTGATGGTGAAGACGAGTATTACAGTCTTGTTTTGAACTTCAAAGAAGCAGTTTTTGGCATAGAAAAAGAGATAGAGATAAGCCGATTAGAGAGCTGCGGAACTTGCAATGGCTCAGGGGCTAAACCAGGGACTACACCAACCAGATGTAGCACTTGTGGAGGTCAAGGACGGGTTGTCTCTTCAACAAGAACTCCATTAGGTATCTTCCAGCAGTCAATGACATGCTCTTCATGCAATGGGACTGGAGAAATGTCAACTCCTTGCAATACATGCTCTGGGGATGGTCGGGTGAGGAAATCAAAGAGGATAAGTCTGAAGGTCCCAGCTGGTGTGGACTCTGGTAGTCGTCTAAGGGTCCGAAATGAGGGCAATTCTGGAAGGAGAGGTGGTTCCCCTGGCGACCTATTTGTAGTTATTGAGGTTATCCCAGATCCTGTCCTTAAACGAGATGACACCAACATTTTATACTCGTGCAAGGTTTCGTATATTGATGCAATCCTGGGGACAACAACTAAGGTTCCTACTGTAGACGGAATGGTGGATTTAAAAATTCCTGCTGGGACACAACCGAACACAACACTTGTTATGGCTAAGAAAGGTGTTCCCTTCCTTAATAAAAACAATATGAGGGGTGATCAGTTGGTTCGTGTGCAAGTTGAAATCCCTAAAAGACTAAGCAATGATGAGAGAAAGCTTATAGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTGCCACCGGTAGGAGATAG 1317 0.448 MAITTFSSTSAAQWGIHPRLLVRSSITGKVASSSHNATSRVSFMAASSSSFFSRDSTLLSVGAPQTCSRRKGSRLIVRADAQDYYSVLGVSRNASKSEIKSAYRKLARNYHPDVNKEPGAEQKFKDISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNPFDLFESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPTRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGEMSTPCNTCSGDGRVRKSKRISLKVPAGVDSGSRLRVRNEGNSGRRGGSPGDLFVVIEVIPDPVLKRDDTNILYSCKVSYIDAILGTTTKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPFLNKNNMRGDQLVRVQVEIPKRLSNDERKLIEELADLSKGKTATGRR* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2648 438 Gene3D - 191 326 - -
Pvu2g2648 438 TIGRFAM DnaJ_bact: chaperone protein DnaJ 83 427 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pvu2g2648 438 Gene3D DnaJ domain 80 184 IPR036869 -
Pvu2g2648 438 PRINTS DnaJ domain signature 85 103 IPR001623 -
Pvu2g2648 438 PRINTS DnaJ domain signature 103 118 IPR001623 -
Pvu2g2648 438 PRINTS DnaJ domain signature 119 139 IPR001623 -
Pvu2g2648 438 PRINTS DnaJ domain signature 139 158 IPR001623 -
Pvu2g2648 438 SUPERFAMILY HSP40/DnaJ peptide-binding domain 336 422 IPR008971 GO:0006457|GO:0051082
Pvu2g2648 438 CDD DnaJ 83 136 IPR001623 -
Pvu2g2648 438 ProSitePatterns Nt-dnaJ domain signature. 124 143 IPR018253 -
Pvu2g2648 438 Pfam DnaJ domain 83 144 IPR001623 -
Pvu2g2648 438 CDD DnaJ_C 192 414 - -
Pvu2g2648 438 Gene3D - 221 284 - -
Pvu2g2648 438 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 208 288 IPR036410 -
Pvu2g2648 438 Hamap Chaperone protein DnaJ [dnaJ]. 80 434 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pvu2g2648 438 Gene3D - 331 437 - -
Pvu2g2648 438 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 31 438 - -
Pvu2g2648 438 ProSiteProfiles dnaJ domain profile. 83 147 IPR001623 -
Pvu2g2648 438 SMART dnaj_3 82 139 IPR001623 -
Pvu2g2648 438 PANTHER BNAA01G34580D PROTEIN 31 438 - -
Pvu2g2648 438 SUPERFAMILY Chaperone J-domain 77 176 IPR036869 -
Pvu2g2648 438 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 344 IPR008971 GO:0006457|GO:0051082
Pvu2g2648 438 Pfam DnaJ C terminal domain 196 411 IPR002939 -
Pvu2g2648 438 ProSiteProfiles Zinc finger CR-type profile. 208 289 IPR001305 GO:0031072|GO:0051082
Pvu2g2648 438 CDD DnaJ_zf 221 284 IPR001305 GO:0031072|GO:0051082
Pvu2g2648 438 Pfam DnaJ central domain 221 284 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2648 Pvu-Chr2 42407817 42413552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2648 78 144 C2H2 Transcription Factor Family AT1G74250 41.096 4.87e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2648 K03686 - gmx:100811006 802.742