Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2644 ATGCCAAACACCACTCAACATTTCCCAAACAAGAACAACATCAACTTCCCCAACGATTCCCTGCATGTTTCCCTTCGCAACCTCTCCCAACTCAGCACCCGAATGGATTCGCTTCAAACCTTTGTCTCCCAATCCATTCAATCCCACACTCTCCTCACACACCACCAAATGAACATCGTATCCAACGAGATCCTAACCGCAATTCGCCACGTCATCACCAACGGCGCAGCCTTAGTCGCAGCCTCCGAGAACGTCCTTCCGCTTTCGGACACTCCAACGTCGGACTCTCCCAACCTAACCAGCGACGAAACAAGCGTGGTGGAGCTGGACGCGATGGAACTCCTGGTGCAGCACCTCCATTTCTGCGAGGTGTGCGGGAAAGGCTTCACGCGCGACGCCAACCTTAGGATGCACATGCGCGCCCACGGGGACGAGTTCAAGACTCCGGACGCGCTCGTGAGCAGGGCGCGTGGCGAGACGCGCACGAAGGCAACGCGGTTCTCGTGCCCCTTCGAAGGATGCAACCGCAACAAGACGCACAAGAAGTTCAGGCCGTTGAAGTCGGTGCTCTGTCTGAGGAACCATTTCAAGAGGAGCCACTGTCCCAAAACGCTGTCGTGCGAGCGGTGTCGGAAGAAGAGCTTCGCAGTGCTCTCGGACTTGAGGAGTCACGTGAAGCAGTGTCGTGGAGAGGCCACGTGGAAGTGCTCGTGCGGAACCACGTTTTCGCGGAAGGACAAGCTGTTCGGACACGTGGCGCTGTTCGAGGGGCATTTGCCGATGCTTGAAGAGGAGAAGGAGACATCTGTGGTGGCGGCGGCGGCGGCGGCGAAAGGGTTGGTGAAGGAAAATGACGGTGGTTTGGATGGGTTACCTGAAGGGTTCTTTGATGGGTTGGATGAATTTGGGTTTGGTTCCTCTGAAATCACCTCTTCACCGGAGGAAACTTGGCCGGCATTCAGGCTTCCCACAAATAATTTAAATGGAAACTCTCATTTCTAA 1002 0.5549 MPNTTQHFPNKNNINFPNDSLHVSLRNLSQLSTRMDSLQTFVSQSIQSHTLLTHHQMNIVSNEILTAIRHVITNGAALVAASENVLPLSDTPTSDSPNLTSDETSVVELDAMELLVQHLHFCEVCGKGFTRDANLRMHMRAHGDEFKTPDALVSRARGETRTKATRFSCPFEGCNRNKTHKKFRPLKSVLCLRNHFKRSHCPKTLSCERCRKKSFAVLSDLRSHVKQCRGEATWKCSCGTTFSRKDKLFGHVALFEGHLPMLEEEKETSVVAAAAAAKGLVKENDGGLDGLPEGFFDGLDEFGFGSSEITSSPEETWPAFRLPTNNLNGNSHF* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2644 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Pvu2g2644 333 SMART c2h2final6 205 226 IPR013087 -
Pvu2g2644 333 SMART c2h2final6 120 142 IPR013087 -
Pvu2g2644 333 SMART c2h2final6 167 200 IPR013087 -
Pvu2g2644 333 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 95 299 - -
Pvu2g2644 333 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 18 89 - -
Pvu2g2644 333 Gene3D Classic Zinc Finger 120 142 - -
Pvu2g2644 333 SUPERFAMILY beta-beta-alpha zinc fingers 119 144 IPR036236 -
Pvu2g2644 333 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 18 89 IPR044300 GO:0010044|GO:0010447
Pvu2g2644 333 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 95 299 IPR044300 GO:0010044|GO:0010447
Pvu2g2644 333 Gene3D Classic Zinc Finger 159 256 - -
Pvu2g2644 333 Pfam Zinc-finger of C2H2 type 121 140 - -
Pvu2g2644 333 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2644 Pvu-Chr2 42366100 42367101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2644 98 291 C2H2 Transcription Factor Family AT1G34370 51.000 1.23e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu2g2644 zf-met 0.0014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2644 - - pvu:PHAVU_002G256900g 660.988