Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2620 ATGACGCAGCAGAATGTGGTATTGTCCAAGACAAAATCCGGGATCAACAGGGACCTAACGGTTGCGCAAAAGCCACCGGCTGCGCCGGGAGGCTACATTCCCATTCCGAGGAGGAGGGTTTTGAAGAACCTGGAGATCAATGGAGGACAAAGAATCAATGCATGGGTTGATTCCATGAGAGCCTCTTCTCCCACCCAGGCCAAATCAACTTCTTCCTTCGCTGAAGAACACAGCTCTTGGATTCTTCGCCACCCTTCGGCATTAGACATGTTTGAGCAAATTATGGATGCATCCAGGGGAAAGCAAATCGTCATGTTCCTGGACTATGACGGTACTTTGTCACCTATTGTTGATGATCCAGACCGCGCTTTCATGTCGGATTCGATGAGGAAAACAGTGAGGAAACTTGCGAGGTGTTTTCCCACTGCTATAGTTACAGGCAGATGCAAAGACAAGGTTTACAATTTTGTGCGCTTGGCTGAGCTATATTATGCTGGAAGCCATGGCATGGATATCCAAGGGCCAACAAGAGACTCCAAATACAGCAACAAAGACAAAGGAGAGCCACTTCTTTTTCAACCTGCCAGTGAATTTCTTCCCATGATAGATGAGGTGTACAATCAATTAGTTGAGAAAATGAAATCAATCCCTGGAGCTAGGGTGGAGAACAACAAGTTTTGCGCCTCTGTTCATTTTCGCTGCGTTGATGAAAAGAAATGGAGTGAACTGGCACAGGAAGTGAGATCAGTGTTAAAAGAGTACCCGAAGCTTCGTCTTAACCAAGGAAGAAAGGTATTAGAGATTCGTCCATCCATTAAATGGGACAAAGGGAAAGCACTGGAATTTTTGTTAGAGTCACTCGGATTTGCCAACTGTAACGATGTCTTTCCTGTTTACATTGGAGATGATAAAACCGATGAAGATGCATTCATGAAACTAAGAGACAGAGGACAAGGTTTTGGGATTCTTGTCTCGAAATTCCCAAAGGACACTACTGCATCCTACTCTTTACAAGAACCTAACGAGGTGATGGATTTCCTTCAACGATTGGTGGAGTGGAAACAAGTATCCCTTCGTCTTCGAGCACATTCCCGTGTGTAA 1101 0.4505 MTQQNVVLSKTKSGINRDLTVAQKPPAAPGGYIPIPRRRVLKNLEINGGQRINAWVDSMRASSPTQAKSTSSFAEEHSSWILRHPSALDMFEQIMDASRGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCKDKVYNFVRLAELYYAGSHGMDIQGPTRDSKYSNKDKGEPLLFQPASEFLPMIDEVYNQLVEKMKSIPGARVENNKFCASVHFRCVDEKKWSELAQEVRSVLKEYPKLRLNQGRKVLEIRPSIKWDKGKALEFLLESLGFANCNDVFPVYIGDDKTDEDAFMKLRDRGQGFGILVSKFPKDTTASYSLQEPNEVMDFLQRLVEWKQVSLRLRAHSRV* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2620 366 Pfam Trehalose-phosphatase 106 340 IPR003337 GO:0003824|GO:0005992
Pvu2g2620 366 Gene3D - 203 363 IPR023214 -
Pvu2g2620 366 Gene3D - 103 189 IPR023214 -
Pvu2g2620 366 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 362 - -
Pvu2g2620 366 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 362 IPR044651 GO:0004805|GO:0005992
Pvu2g2620 366 TIGRFAM T6PP: trehalose-phosphatase 101 351 IPR003337 GO:0003824|GO:0005992
Pvu2g2620 366 CDD HAD_TPP 104 344 - -
Pvu2g2620 366 SUPERFAMILY HAD-like 104 353 IPR036412 -
Pvu2g2620 366 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 105 312 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2620 Pvu-Chr2 42129509 42132421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2620 94 357 Trehalose Biosynthesis Gene Families AT1G06410 24.382 3.33e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2620 K01087 - gmx:100788735 668.307