Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2619 ATGGGAACCGCTATAGATATGTACAACAACACCAACATCGTACCGGATTTCATAGATCCGTATAGTGAGGAGCTGATGAGAGCACTTGAGCCTTTTATGAAAACTGATTATTTCTCTGCCTCTTCTAATTCTGCATCTCCCTCACGTCAATCACACCCTTCTTCTCTCATTTCATCTACTTCGTATTCCTCCCCCAACCAAATCAAACTAAACCAACTCACCTCAGATCAAATCCTCCAGATTCAGGCCCAGGTCGGGATTCAACACCACGTGGGTCATTCCAACCAACGTCAAAATCAAGCCCAGATGGGGCCAAAACGTGTCCCCATGAAACACGGTGGCGCGGCCGCGAAAGCTGCGAAGCTGTACCGTGGGGTGCGGCAACGGCATTGGGGGAAGTGGGTCGCCGAGATCAGACTCCAGAAGAACCGCACGCGCCTCTGGCTGGGAACATTCGACACCGGAGAGGAAGCGGCGCTGGCGTACGACAACGCAGCGTTTAAGCTCCGAGGCGAGTTCGCGCGCCTCAACTTCCCTCATCTGCGACACCAGGGAGCGTTCGTATTCGGCGACTTTGGAGATTACAAGCCGCTACCTTCTTCCGTGGACTCCAAGCTCCAAGCTATTTGTGAAAGCATGGGAAAACAAGAACAAAAAAAGTGTTGCTCCGTCGAAGACGTGAAGCCCGAGGTACACGCTGCCGCTGAGCTGGCGCCGGTGGATTCTGACGTGGCGCAATCCAACGTTTGTCCCGAGTTGGACAATATTAAGGTAGAAAACATGAACGAAACCCCAATGTTGTCATGGCCTGTGTCTGGCGAATCTTCTTCGCCTGAATCGGGTTTTACTTTCTTGGATTTGTCGGATTTCTCATATTCTAATTATGAGTGGGATGAAATAGAGAGTTTTGGGTTGGAGAAGTACCCTTCGGTGGAGATTGATTGGGCGGCTATATGA 957 0.5089 MGTAIDMYNNTNIVPDFIDPYSEELMRALEPFMKTDYFSASSNSASPSRQSHPSSLISSTSYSSPNQIKLNQLTSDQILQIQAQVGIQHHVGHSNQRQNQAQMGPKRVPMKHGGAAAKAAKLYRGVRQRHWGKWVAEIRLQKNRTRLWLGTFDTGEEAALAYDNAAFKLRGEFARLNFPHLRHQGAFVFGDFGDYKPLPSSVDSKLQAICESMGKQEQKKCCSVEDVKPEVHAAAELAPVDSDVAQSNVCPELDNIKVENMNETPMLSWPVSGESSSPESGFTFLDLSDFSYSNYEWDEIESFGLEKYPSVEIDWAAI* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2619 318 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Pvu2g2619 318 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
Pvu2g2619 318 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
Pvu2g2619 318 CDD AP2 123 181 IPR001471 GO:0003700|GO:0006355
Pvu2g2619 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 67 318 - -
Pvu2g2619 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 1 66 - -
Pvu2g2619 318 SUPERFAMILY DNA-binding domain 122 180 IPR016177 GO:0003677
Pvu2g2619 318 MobiDBLite consensus disorder prediction 39 61 - -
Pvu2g2619 318 Gene3D AP2/ERF domain 122 180 IPR036955 GO:0003700|GO:0006355
Pvu2g2619 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 66 - -
Pvu2g2619 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 67 318 - -
Pvu2g2619 318 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Pvu2g2619 318 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2619 Pvu-Chr2 42080727 42082576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2619 4 318 AP2-EREBP Transcription Factor Family AT4G39780 47.040 7.73e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu2g2619 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2619 K09286 - gmx:100797648 455.292