Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2594 ATGCAGAGCCAACTTGTGTGCAATGGTTGTAGGAGCCTTCTGCTTTACCCGAGAGGGGCTACCAATGTTTGTTGTGCATTGTGCAACACGATTACCTCTGTTCCTCCACCTGGGATGGAAATGTCTCAACTTTACTGTGGAGGCTGTAGGACGTTGCTAATGTACACTCGTGGAGCTACAAGTGTGAGATGTTCCTGCTGTCACACTGTAAACCTTGTTCCAGCATCTAATCAGGTAGCTCATGTCCATTGTGGGAACTGCCGGACAGCCCTCATGTATCCTTACGGAGCTCCCTCAGTCAAATGTGCTATTTGTCACTATATTACTAATGTAAGTACGAACAATGGACGGCTTCCAATCCCTGTCAATAGACCCAATGGGACAACCAATGCTGGAACATTACCTTCTACTTCAACATCAATGCCTCAAACTCAAAGTCAAACAGTAGTAGTAGAAAATCCAATGTCTGTGGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGCGTCACAACAGATAAGAAATAG 531 0.4501 MQSQLVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPASNQVAHVHCGNCRTALMYPYGAPSVKCAICHYITNVSTNNGRLPIPVNRPNGTTNAGTLPSTSTSMPQTQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2594 176 Pfam LSD1 zinc finger 84 108 IPR005735 -
Pvu2g2594 176 Pfam LSD1 zinc finger 46 70 IPR005735 -
Pvu2g2594 176 Pfam LSD1 zinc finger 7 31 IPR005735 -
Pvu2g2594 176 PANTHER LSD1-LIKE PROTEIN 1 174 - -
Pvu2g2594 176 MobiDBLite consensus disorder prediction 118 143 - -
Pvu2g2594 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Pvu2g2594 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Pvu2g2594 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Pvu2g2594 176 PANTHER PROTEIN LSD1 1 174 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2594 Pvu-Chr2 41876864 41881593 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pvu2g2594 zf-LSD1 8.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2594 - - gmx:100776394 349.747