Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2593 ATGGTCTCTGTTCTTGTTTCAGGCACATTAAGTTATTCAATTGGGTTGATCCTGCATTTTGCATGGAATGAAACAGTTGAAATTGGCTGCAGAATTTCACGTATAGAGGATAATCTTCTCAGGCATAAGCCAGAAATGGATATCACATTTGAGTCTTCTGCCAGTCCGCAGCATAAAAAGATATCAGCCAGATGGGACCCGGTTGAAGCATGTCGGCCTACAATTGATGAAGCTCCTGTGTTCTATCCAACTATTGAGGAGTTTGAAGACACACTTGGTTACATAGCTAAGATTCGCCCCCAAGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGGTACCACCATGCCCTCTTAAGGAGAAAGATTTATGGGAAAATGCAAAGTTTCCCACTCGTATCCAGCAAATTGATTTGCTTCAGAACAGGGAGCCCATGAGAAAGAAAAGTAGGGGAAGGAAGCGAAAACGTAGAAAGCAATCAAAGATGGGTACAGGTAGGAGAACTGCCAAATCAGGTTCTGAAGCTAACGGTGCTTCTGAGCCTGAGGAGAAGTTTGGATTCCAATCAGGGTCAGACTTCACACTTAAAGACTTTCAGCAATATGCTAAGGTTTTTAAAGATTGCTACTTTGGATTGAATGATTCCAATGAATATGGAAAAGTTAGCGATTATAATCACTGGCAGAGATGGGAGCCCTCTGTGGAGGACATTGAAGGTGAATACTGGAGAATAATAGAGCAACCAACTAATGAGGTTGAGGTGTATTATGGAGCTGACCTGGAAACTGGATCACTTGGAAGTGGCTTTCCTAAGACATCATCCTTAACTAAGAATGATTCAGACAGGTATGCTGTGTCTGGCTGGAATCTGAATAACTTCCCGCGATTGCCAGGTTCTGCGTTGTGTTTTGAAGGAAGTGATATATCAGGAGTTCTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTCTGCTGGCATGTTGAGGACCATCACCTCTATTCACTTAATTATCTGCATTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGAACCCATGCTCCAGGTTTGGAAGATGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCAAATCTACTCAATGAATTGGTGACTCAATTATCTCCTTCAATTCTTAAATCTGAGGGGGTGCCTGTACATCGCACTGTTCAGAATTCAGGTGAATTTGTTATCACCTTTCCAAGGGCGTACCACTGTGGCTTCAATTGTGGCTTCAATTGCGCAGAGGCTGTAAATGTGGCTCCTGTTGATTGGCTTGTGCATGGTCAGAATGCTGTTGAGCTTTATAGTTTGCAGTGCCGTAAGACTTCATTGTCCCATGACAAGTTATTATTTGGATGTGCTCAGGAAGCCGTGTCTGCCCTTGCAGGGCTAACTCTTAATGAAAAAGAAAATCTAAAATATATAAAATGGAGTAGTGCTTGTGGGAAAGATGGAGTTCTTACCAAGGCAATTAAGACAAGGATAACTATGGAAAAGGAGAGGCTTGAATGTCTTCCCACTCATTTAAAGAAACTTAGGATGGACAGTGAGTTTGATTTGTTTGAGGAAAGAGAATGTTTCTCTTGCTTCTATGACTTGCACCTATCTGCCGTAGGTTGCAAGTGCTCGCCCGATAGTTATTCGTGCCTCAAGCACTCACATTTGTTTTGCTCATGTGAGATGGACGAAAGCTTTGTACTGTTTCGTTATACCATGAATGAACTAAGTACATTGGTTGAGGCATTAGAAGGAGAAGCACATGCTATTGAAGTGTGGGCAAATAGAAACACCGGACTGGTTTCTGTTAATGCTGAGGATGCTTGCATCTATAAACAAGATGCAGAGAGTTACAAAGGATGGAAAAGTTCAAGATATTGTGCAGGAACCAATGATAAGTCAAATTCAAATATACCTAGCAGTTCTTACAGCCACATTTCTGCAGAGTTAGTCCACTCAGAATTTCATCTCGAAACTTATAGTGCACCGTATGGCACTAAAGATTGTAAAAAAGATATCGGGAATGAAAAAAAATTGGTGATGGACAATAAGGTGAAGGAAGGTTCTCTGGATTTGAATATTGATGTTATGTTTGTTGAACCTGAAAATCATTTTCTGCATGCTGCTGAATACCATCATAATAAGAGTGTTCCATATGTTGGGGAAGTCTGCTATTCAGAGGTAAAAAAGAAACAAGACAAAATGAAACCCGGGGCTGGATGTATAGCTTCCTTGGAGAAGGAATTTTCATCATGTTCAAGGGACGTTCAAAATTCTTGTACACTAGATGGTTATAAATTGTTTGGGGTGGATCTGCAGATGCATTCTGATTCGAGAGAACAACTCAACGGCGTATTTAAAATAGGTGTTGTTGAAACGTCCAATACAAGTGTATCTTTGACAAACCAAAACTTCTTAATGCAGAAGATTATTGTGTCTGTTGAGCCCGTGAATTTGGGCATTGTTATGTGTGGTAAGTTGTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTAAGCATTCTTGATCCACCAAGAATTTGTAACTATGTTTCTGAAGTCTTTGATGCTGGATTTCTTGGGCCTCTTTTCAAGGTTAGCATGGAAGAACGTCCAAGTGAGGCCTTCACAAACACTTCAGCAGATAAGTGCTGGGAGTCAGTTCTTGAGAGACTAAATCATGAAACCAAGAAGCTAAGGAATCAAGGTGAAAGAGAACCTCCTCCCTTGGAGCTTCTACAAAGCATTAATGGTCATAAAATGTTTGGATTCCTTTCACCATCCATCATTCAGGCCATTGAAGCTCTGGATCCCAATCATCAATGCGTCGAGTACTGGAATCACAAAGAAGTTGTCTCTGAATCTTCAGACAGTGGCATTGATGACTGTAAGCTCAGTCATGGTTCAAGTAACTCTCTAAGTGATGTCAAGACCAGACTTCTTGGTCCTGGTTTGAGAAAGCTGGAACAAGATAGCAGCAGAAGACATTGTGACTCTTTTGAAGAGATGAAATTGGTGCTAGAAGGGTTATTGAAAAAGGCGAGTGCTGAAGAATTAAGTGCCATGCACAAGTTATTCAGCTCTGATGCACAGTTCACCAAGTGGAGAGAGGCATTTGTAACTCTGATTGAGGAAATCCAGAAAGCTTGA 3216 0.4126 MVSVLVSGTLSYSIGLILHFAWNETVEIGCRISRIEDNLLRHKPEMDITFESSASPQHKKISARWDPVEACRPTIDEAPVFYPTIEEFEDTLGYIAKIRPQAEPYGICRIVPPACWVPPCPLKEKDLWENAKFPTRIQQIDLLQNREPMRKKSRGRKRKRRKQSKMGTGRRTAKSGSEANGASEPEEKFGFQSGSDFTLKDFQQYAKVFKDCYFGLNDSNEYGKVSDYNHWQRWEPSVEDIEGEYWRIIEQPTNEVEVYYGADLETGSLGSGFPKTSSLTKNDSDRYAVSGWNLNNFPRLPGSALCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGTHAPGLEDAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVHRTVQNSGEFVITFPRAYHCGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSLQCRKTSLSHDKLLFGCAQEAVSALAGLTLNEKENLKYIKWSSACGKDGVLTKAIKTRITMEKERLECLPTHLKKLRMDSEFDLFEERECFSCFYDLHLSAVGCKCSPDSYSCLKHSHLFCSCEMDESFVLFRYTMNELSTLVEALEGEAHAIEVWANRNTGLVSVNAEDACIYKQDAESYKGWKSSRYCAGTNDKSNSNIPSSSYSHISAELVHSEFHLETYSAPYGTKDCKKDIGNEKKLVMDNKVKEGSLDLNIDVMFVEPENHFLHAAEYHHNKSVPYVGEVCYSEVKKKQDKMKPGAGCIASLEKEFSSCSRDVQNSCTLDGYKLFGVDLQMHSDSREQLNGVFKIGVVETSNTSVSLTNQNFLMQKIIVSVEPVNLGIVMCGKLWCSKHAIYPKGFKSRVKFLSILDPPRICNYVSEVFDAGFLGPLFKVSMEERPSEAFTNTSADKCWESVLERLNHETKKLRNQGEREPPPLELLQSINGHKMFGFLSPSIIQAIEALDPNHQCVEYWNHKEVVSESSDSGIDDCKLSHGSSNSLSDVKTRLLGPGLRKLEQDSSRRHCDSFEEMKLVLEGLLKKASAEELSAMHKLFSSDAQFTKWREAFVTLIEEIQKA* 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2593 1071 ProSiteProfiles FYR domain FYRN motif profile. 821 879 IPR003888 GO:0005634
Pvu2g2593 1071 SUPERFAMILY Clavaminate synthase-like 194 474 - -
Pvu2g2593 1071 SMART fyrn_3 835 879 IPR003888 GO:0005634
Pvu2g2593 1071 Pfam C5HC2 zinc finger 542 594 IPR004198 -
Pvu2g2593 1071 MobiDBLite consensus disorder prediction 140 188 - -
Pvu2g2593 1071 Pfam F/Y rich C-terminus 883 970 IPR003889 GO:0005634
Pvu2g2593 1071 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 32 1071 - -
Pvu2g2593 1071 SMART cupin_9 286 452 IPR003347 -
Pvu2g2593 1071 MobiDBLite consensus disorder prediction 150 168 - -
Pvu2g2593 1071 Pfam F/Y-rich N-terminus 832 876 IPR003888 GO:0005634
Pvu2g2593 1071 ProSiteProfiles JmjC domain profile. 286 452 IPR003347 -
Pvu2g2593 1071 Gene3D Cupin 63 436 - -
Pvu2g2593 1071 SMART fyrc_3 885 979 IPR003889 GO:0005634
Pvu2g2593 1071 PANTHER LYSINE-SPECIFIC DEMETHYLASE 32 1071 - -
Pvu2g2593 1071 Pfam jmjN domain 79 112 IPR003349 -
Pvu2g2593 1071 SMART JmjN_1 77 118 IPR003349 -
Pvu2g2593 1071 Pfam JmjC domain, hydroxylase 319 435 IPR003347 -
Pvu2g2593 1071 ProSiteProfiles JmjN domain profile. 78 119 IPR003349 -
Pvu2g2593 1071 Gene3D - 826 965 - -
Pvu2g2593 1071 ProSiteProfiles FYR domain FYRC motif profile. 881 971 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2593 Pvu-Chr2 41862751 41870732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2593 36 615 JUMONJI Transcription Factor Family AT1G30810 63.837 0.0 737
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pvu2g2593 JmjC 3.4e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2593 - - pvu:PHAVU_002G251900g 2192.16