Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2555 ATGGCTGCTCCTACTATTCCTCCGCCTCCACCAATCAACATTGAACCTGGAAATTGCCCTGAAGCGGTGAAGCAATGGTACTACCTCACATCACTACCAAGTAACAGGAGAAAGTCAACATTGTGCAGGGAACTCTCCCTCCAAGCCAAGAGACATCTTTGTTATCTGGGCTGGAAATTTTGGTATATTGACAAGAAAGAAAAGTGGGAGTTGCGTTACACATCACCCGTCAGCGGCAAGAATTACGTTTCACTAGCGAGGGCATGTAAAGGTTGCATAGAGGAAGACGGTGTTTGCAATGGAAACCCTCAAAATCGTAAAGAAAACAACGTTCTCGAATATCCTACCTCTTCTCAATCAAAAAAGGAAACAATAGAATCCAATCTTAAAGAAAACAACGTTCTCGAATACCCTACTTGTCAACCAACACAGGAAACAACAGAATCCGGTAAGATAACCACGTGCAAGAAAAGGCAAAGGGATGATAAAGATGATGAGTCAGGGGAAGACTTTACTTCTATGAATAGTAATAGAGGTAAGTCTGTGCGGGCAATCGTGAGGCAAAACGGGTTCATTTTAAAAGATGGACAATCATTGTTAGATTGTCAAAAAGAGGCACAGCCAAACGGATTAGTGGAAGAAGAGGAAGTTGATGACTGTGGTTATCGAAATGATAGTATTTGTGCCGTTTGTTGTTACGGTGGTAAACTAGTGTTGTGTGATGGATGCCCTTCTTCGTTCCACCTTAGGTATTTAGGTTTAACCCATGTTCCTGATGGTGATTGGTTTTATCCAGTTTGTTCATGTAAAATATGCAGACGACCCAGATGCAGAGATGACTCTCTTCGTAATGAAGGTGTTAACAGTGTTTTAGTCTGTCATCAGTGTGAGGGAAAATACCATATTGGGTGCTTAAAAGCTCCAGCACCAGCACACACCCAGATGGAAAAGGAAGAAGACGATGTTGGTAAAGGGAACTGGTTCTACAGTACAGACTGTGAGGAGATATTTTTCCGTCTGCATGATCTTTTGGGAAAAACCATTAATGTTGCTCCATATAATCTTACTTGGACGCTGTTGAAGGCGGTGAAAAAGGATGGAAGTGGAGAAAACGAAAGCAAGTTGAGGGCAGCTCTTGATGTATTGCATGAGAGTTTCGACCCAGTGATTGATGTTTTTTCTGGTAGAGATGTGATAGCAGACGTTGTTTTCAGCAGAGGATCAAAAGACGATCGCTTCAATTATCGTGGCTTTTACACTGTGGTTCTCGAGAGGGATAAAGAGATGGTTTGTGTTGCTACTGTAAGGGTTTTTGGGAAGAGGGTTGCGGAAATTCCCTTTGTGGCTACGCAGTGTAGAAGGCAAGGAATGTGTGGCATCTTGATGAATGAGATTGAAAAACTGTTAACGTACTTGGGAGTGGAGAGAGAGGTTGGTTCTGCCTTCCTCGTACACTGCAATAGACTGGACAAAATCATTTGA 1482 0.4258 MAAPTIPPPPPINIEPGNCPEAVKQWYYLTSLPSNRRKSTLCRELSLQAKRHLCYLGWKFWYIDKKEKWELRYTSPVSGKNYVSLARACKGCIEEDGVCNGNPQNRKENNVLEYPTSSQSKKETIESNLKENNVLEYPTCQPTQETTESGKITTCKKRQRDDKDDESGEDFTSMNSNRGKSVRAIVRQNGFILKDGQSLLDCQKEAQPNGLVEEEEVDDCGYRNDSICAVCCYGGKLVLCDGCPSSFHLRYLGLTHVPDGDWFYPVCSCKICRRPRCRDDSLRNEGVNSVLVCHQCEGKYHIGCLKAPAPAHTQMEKEEDDVGKGNWFYSTDCEEIFFRLHDLLGKTINVAPYNLTWTLLKAVKKDGSGENESKLRAALDVLHESFDPVIDVFSGRDVIADVVFSRGSKDDRFNYRGFYTVVLERDKEMVCVATVRVFGKRVAEIPFVATQCRRQGMCGILMNEIEKLLTYLGVEREVGSAFLVHCNRLDKII* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2555 493 MobiDBLite consensus disorder prediction 151 171 - -
Pvu2g2555 493 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 12 143 - -
Pvu2g2555 493 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 191 476 - -
Pvu2g2555 493 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 12 143 - -
Pvu2g2555 493 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 191 476 - -
Pvu2g2555 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 336 IPR013083 -
Pvu2g2555 493 SUPERFAMILY FYVE/PHD zinc finger 214 278 IPR011011 -
Pvu2g2555 493 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 401 476 IPR016181 -
Pvu2g2555 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 270 IPR013083 -
Pvu2g2555 493 MobiDBLite consensus disorder prediction 142 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2555 Pvu-Chr2 41533076 41534557 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2555 191 472 PHD Transcription Factor Family AT5G58610 44.518 1.11e-70 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2555 - - pvu:PHAVU_002G248300g 1016.91