Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2554 ATGGAAATTCACTACAGTAGCAGCTACTTCGAAAGACGCCCCATTCTCAAGTCCAAGGCTCCCGCAGTTAAATGGGTTAAAGAATGGGTTCCCCAAGATCTTGTAACAACTGGAGGAAAATGCATGATCTTAAAATGGGTAACAGAGGATACCTTAAAGACCTTCAAAGAAAAGACAACAGAGCCAACAATGCCTGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGATGGATGTGGAAAGACATTCATAGATGCTGGTGCATTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATATGTCTGTCACTACGAGGGATGTGGAAAGAAATTTCTGGACAGCTCAAAGTTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGACTTTGTGTGTCCTCATGAAGGCTGTGGAAAGGCCTTTTCTTTAGATTTCAACTTAAGGTCTCACATGAAAACACATTCCCAAGAGAACTATCATATCTGCCCATACCCAGATTGTGGAAAGAGATATGCTCACGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGAACGCATCCGTGGATGTGACAAAGTACACTACTCCACCTTCAGAGAAGCAAACAAAAACTGCTAAACCTTCTGGAGGGGCATATGGTTCTGCATCATCTGACCGTCCCTATGCATGTCCATATGATGGGTGTGAAAAGGCATATATCCATGAATACAAGCTTAGACTTCATTTGAAGAGGGAGCACCCGGGGCTTATACCCGATGAAAATGCTGAGCATGCTCAGGCTAATAATGTTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTATCTTGCGAAACGGTCAAATGGTAAAATTCAGAAGCAGAGTAGGCCTAAACCAAGTCATAAGTTGCCTCCTTCCAAAATTGCAAAACGCAAAGTCTCCACTCCCACTTTAACTGTAAATAAAAATTCTTGGTCCGTGAAAGATGAGCCTTTTGATGAAGAAGATAGTGAGGAAACAGAAGAAGATCGTGACAATGTTGAAGATGGTTGGAGATATCCTGCAGGAAACAATGAAGATGACGATGAAGAAACAGAATATGAAGACTGA 1119 0.42 MEIHYSSSYFERRPILKSKAPAVKWVKEWVPQDLVTTGGKCMILKWVTEDTLKTFKEKTTEPTMPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNASVDVTKYTTPPSEKQTKTAKPSGGAYGSASSDRPYACPYDGCEKAYIHEYKLRLHLKREHPGLIPDENAEHAQANNVDNEMDEASDQDAYLAKRSNGKIQKQSRPKPSHKLPPSKIAKRKVSTPTLTVNKNSWSVKDEPFDEEDSEETEEDRDNVEDGWRYPAGNNEDDDEETEYED* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2554 372 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Pvu2g2554 372 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Pvu2g2554 372 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Pvu2g2554 372 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Pvu2g2554 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Pvu2g2554 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Pvu2g2554 372 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Pvu2g2554 372 MobiDBLite consensus disorder prediction 198 220 - -
Pvu2g2554 372 MobiDBLite consensus disorder prediction 334 348 - -
Pvu2g2554 372 MobiDBLite consensus disorder prediction 192 227 - -
Pvu2g2554 372 ProSitePatterns Zinc finger C2H2 type domain signature. 232 255 IPR013087 -
Pvu2g2554 372 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Pvu2g2554 372 MobiDBLite consensus disorder prediction 315 329 - -
Pvu2g2554 372 Gene3D Classic Zinc Finger 202 273 - -
Pvu2g2554 372 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 4 371 - -
Pvu2g2554 372 Gene3D Classic Zinc Finger 103 133 - -
Pvu2g2554 372 Gene3D Classic Zinc Finger 163 195 - -
Pvu2g2554 372 Gene3D Classic Zinc Finger 134 161 - -
Pvu2g2554 372 Gene3D Classic Zinc Finger 77 102 - -
Pvu2g2554 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 260 IPR013087 -
Pvu2g2554 372 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Pvu2g2554 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Pvu2g2554 372 MobiDBLite consensus disorder prediction 290 372 - -
Pvu2g2554 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Pvu2g2554 372 SUPERFAMILY beta-beta-alpha zinc fingers 117 169 IPR036236 -
Pvu2g2554 372 SMART c2h2final6 77 101 IPR013087 -
Pvu2g2554 372 SMART c2h2final6 166 190 IPR013087 -
Pvu2g2554 372 SMART c2h2final6 106 130 IPR013087 -
Pvu2g2554 372 SMART c2h2final6 230 255 IPR013087 -
Pvu2g2554 372 SMART c2h2final6 136 160 IPR013087 -
Pvu2g2554 372 SUPERFAMILY beta-beta-alpha zinc fingers 225 253 IPR036236 -
Pvu2g2554 372 PANTHER BNAA03G13270D PROTEIN 4 371 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2554 10 356 C2H2 Transcription Factor Family AT4G06634 65.205 4.22e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu2g2554 zf-C2H2 0.0089 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2554 - - gmx:100811480 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2554 2 41526523 41530661 Pvu2g2554 2 41526523 41530661 ECH