Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2543 ATGGGTAATTGCTGGTGTAGATGGGAGTCATCAGATTATAGAGTTTCATCCAATGTAAAGTCAGAACAAAACCAGGTAACCAAGCAAAGGAATGATTATGATAGCAAGTTACCATCAAACCCTGAGGAAGTAGAAGACCTACGCCGTGACTCAGCTGCAAATCCATTGATTGTATTCAGTTATGATGAGTTGAAGACAATCACTGCAAATTTTAGGCCAGATCGTGTGTTGGGGGGAGGAGGATTTGGAAGTGTGTACAAAGGGTTCATTTCTGAGGAGTTAAGGCAGGGTCTTCCTACCCTTGCTGTTGCTGTTAAGGTTCATGATGGTGACAATAGTCATCAAGGGCACAGAGAATGGCTGGCAGAAGTCATATTTTTGGGGCAGCTTTCACATCCAAATCTAGTCAAATTAGTTGGATACTGCTGCGAGGATCAACATAGGGTACTGATATACGAGTACATGTCCCGGGGAAGTGTGGAGCACAACTTGTTCTCAAAAATCTTGCTTCCCCTGCCATGGTCCATAAGAATGAAGATTGCATTTGGTGCTGCTAAGGGACTTGCATTTCTTCATGAAGCAGAGAAACCTGTCATCTATCGTGATTTCAAGACATCAAATATTTTATTGGATAAGGACTACAATGCAAAACTTTCTGATTTTGGCCTTGCTAAGGATGGACCAGTTGGAGACAAATCACATGTTTCTACTCGAGTAATGGGAACATATGGTTATGCAGCACCTGAGTACATAATGACAGGTCATCTGACTCCTAGAAGTGATGTTTACAGTTTTGGGGTTGTTCTTCTTGAACTTCTTACAGGAAGAAAATCTTTAGACAAGTTAAGACCTGCTAGAGAGCAGAACCTCACAGAATGGGCTATTCCTTTGCTCAAGGAAAAGAAGAAATTTCTAAACATAATTGATCCAAGGTTGGATGGAGATTATCCAATTAAAGCAGTTCACAAGGCTGCAATGCTTTCATATCATTGCTTGAACCGCAATCCAAAAGCAAGGCCTCTGATGCGAGATATTGTGGACTCATTGGAGCCTTTGCAGGCACACACAGAGGCCCCTAAAACACTGACCATAATCAGTGATGTTCCTGAATCTGGTCTGAAAATGAAAGATGCAAAATGA 1140 0.4175 MGNCWCRWESSDYRVSSNVKSEQNQVTKQRNDYDSKLPSNPEEVEDLRRDSAANPLIVFSYDELKTITANFRPDRVLGGGGFGSVYKGFISEELRQGLPTLAVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLVGYCCEDQHRVLIYEYMSRGSVEHNLFSKILLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDKDYNAKLSDFGLAKDGPVGDKSHVSTRVMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELLTGRKSLDKLRPAREQNLTEWAIPLLKEKKKFLNIIDPRLDGDYPIKAVHKAAMLSYHCLNRNPKARPLMRDIVDSLEPLQAHTEAPKTLTIISDVPESGLKMKDAK* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2543 379 PANTHER OS01G0588500 PROTEIN-RELATED 10 360 - -
Pvu2g2543 379 Gene3D Phosphorylase Kinase; domain 1 33 154 - -
Pvu2g2543 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Pvu2g2543 379 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL16-RELATED 10 360 - -
Pvu2g2543 379 ProSitePatterns Protein kinases ATP-binding region signature. 77 106 IPR017441 GO:0005524
Pvu2g2543 379 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g2543 379 Gene3D Transferase(Phosphotransferase) domain 1 155 367 - -
Pvu2g2543 379 MobiDBLite consensus disorder prediction 17 34 - -
Pvu2g2543 379 MobiDBLite consensus disorder prediction 17 47 - -
Pvu2g2543 379 Pfam Protein tyrosine and serine/threonine kinase 74 349 IPR001245 GO:0004672|GO:0006468
Pvu2g2543 379 SUPERFAMILY Protein kinase-like (PK-like) 43 349 IPR011009 -
Pvu2g2543 379 CDD STKc_IRAK 77 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2543 Pvu-Chr2 41387133 41393168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2543 14 349 Glycoside Hydrolase AT3G07070 48.555 1.60e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pvu2g2543 PK_Tyr_Ser-Thr 7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2543 - - gmx:100775722 721.079