Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2540 ATGGCACTTTGTATGCAGAGAGATTCAGTTTTGAACAGGCTCATGGATTGTGGCAAGTATGTGAGGTACACACCTGAACAGGTGGAGGCTTTGGAGAGGGTGTATGCTGAGTGCCCCAAGCCTAGTTCTTCCAGAAGGCAACAACTCATTAGGGAGTGCCCCATCCTTTCCAACATTGAACAGAAGCAGATCAAAGTGTGGTTCCAGAATCGCAGATGTCGCGAGAAGCAGCGGAAGGAGGCCTCTCGTCTTCAGACAGTGAATAGAAAGCTGTCCGCAATGAACAAGTTATTAATGGAAGAAAATGACCGTCTGCAGAAGCAGGTCTCACAGTTGGTTTATGATAATGGATACATGAAACAACAAATACACACTGCATCTGCTAGTACTACTGACAATAGCTGTGAGTCTGTGGTAGTGAGTGGTCAGAACCAACAGCAAAACCCAAAAACTCAGCATCCCCAGTGGGATGCCAACAACCCAGCTGGTCTTTTTGCAATTGCTCAAGAGACCCTGGCAGCGTTCCTTTCCAAAGCTACTGGAACTGCTATCAACTGGGTTCAAATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCCCAACTGTAGTGGGGTAGCAGCAAGAGCCTGTGGCCTTGTGAGCCTAGAGCCCACTAAGGTTGCGGAGATTCTCAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATGTATTAAGCGTAGTTCCCACAGGGAATGGGGGCACAATAGAGCTCATGTACATGCAGACATATGCACCGACAACCTTGGCAGCTGCAAGAGACTTCTGGACTCTTAGATACACTACAACTTTGGAAGATGGAAGTCTTGTGATTTGTGAGAGGTCTTTGACTTCTTCAACTGGTGGCCCAACAGGGCCTCCTGCCTTAAACTTTGTAAGAGCTGAAGTCCTTCCTAGTGGCTATCTAATTAGATCCTGTGAGGGTGGTGGATCTATTATTCACATTGTTGATCACATGGATCTGGATGTTTGGAGTGTTCCTGAAGTATTAAGGCCTCTCTATGAATCTTCAAAATTCTTGGCTCAGAAATTGACTACTTCTGCCTTGCGACATGTAAGACAAATTGCACAAGAATCAAGTGGAGAAGTTCATTGTGGTGGGGGTCGTCAACCTGCTGTCTTAAGAACATTTAGTCAAAGACTTTGCAAAGGATTCAATGATGCTGTCAATGGGTTTGTGGATGATGGTTGGTCGCTGATTGGTAATGATGGGGTGGAAGATGTGACCATAGCCATAAACTCATCTCCAAACAAGTTTTATGGTTCCCATTACAATACATCAATGCTTCCAACATTGGGTGGTGGGGTTCTGTGCGCCAAGGCTTCAATGCTCCTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGATTTTTGAGGGAACATCGTTCGGAGTGGGCTGATTATGGGGTTGATGCATACTCTGCTGCATGTCTCAAAGCTAGTCCTTATGCAGTTCCCTGTGCAAGACCTAGTGGTTTCCCAAGCAGCCAGGTCATTTTACCGCTTGCTCATACTATTGAGCATGAGGAGTTTTTGGAGGTAGTTCGTATTGAGGGTAATGCATTCCCCCCTGATGATGTAGCTTTAGCATGTGATATGTATCTATTGCAGCTGTGCAGTGGAGTTGATGAAAATGCAATTGGAGCATGCGCACAGCTTGTGTTTGCACCTATCGATGAATCTTTTGCAGATGATGCTTTGTTACTGCCTTCTGGTTTCTGCATCATACCATTGGATCCTAAAACGGATGGTCCAGCTTCAACTAGGACATTGGATTTGGCATCAGCACTAGACATAGGATCTGGTAATGCCCGTCCTGCTGGTGAAAGTGATTTGAGTAACTACAACCTTAGGTCAGTCCTCACAATTGCATTCCAGTTTACTTTTGAGAACCATTTGCGGGACAACGTGGCTGTTATGGCTCGCCAATATGTGCGCAATGTTGTAAGATCAGTTCAGAGGGTTGCCATGGCAATTGCACCCTCTCGGCTCAGTACTACTGAGTTAGGGTCAAAGTCACTTACTAGTCCACCAGAGGCTCTTACCTTGGCAAGATGGATCTGCAGAAGCTACAGGCTGCACACCTGTTCAGATCTTTTTAGAGTTGAGTCCACATCTGGTGATGCAATCTTGAAGCAACTTTGGCACCATTCAGATGCAGTATTATGCTGTTCTGTAAAAACTAATGCATCTCCGGTGTTCACCTTTGCAAACCAAGCTGGACTTGATATGCTTGAAACCACACTTGTTGCTCTTCAAGACATAATGCTGGATAAAGTTCTTGATGAATCTGGCAGGAAGGTTCTGTGCATTGAGTTCTCCAAGATAATGGAACAGGGGTTTGCATATCTTCCAGCAGGAATATGTGTATCAAGTATGAATCGACCAGTGTCCTATGAACAGGCCATAGTATGCAAAGTTCTGGATGATCATGATTCCAATCACTGCCTTGCCTTTGTGTTCATGAACTGGTCTTTTGTCTAA 2544 0.4544 MALCMQRDSVLNRLMDCGKYVRYTPEQVEALERVYAECPKPSSSRRQQLIRECPILSNIEQKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVYDNGYMKQQIHTASASTTDNSCESVVVSGQNQQQNPKTQHPQWDANNPAGLFAIAQETLAAFLSKATGTAINWVQMIGMKPGPDSIGIVAVSPNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCLNVLSVVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTTLEDGSLVICERSLTSSTGGPTGPPALNFVRAEVLPSGYLIRSCEGGGSIIHIVDHMDLDVWSVPEVLRPLYESSKFLAQKLTTSALRHVRQIAQESSGEVHCGGGRQPAVLRTFSQRLCKGFNDAVNGFVDDGWSLIGNDGVEDVTIAINSSPNKFYGSHYNTSMLPTLGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCARPSGFPSSQVILPLAHTIEHEEFLEVVRIEGNAFPPDDVALACDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFCIIPLDPKTDGPASTRTLDLASALDIGSGNARPAGESDLSNYNLRSVLTIAFQFTFENHLRDNVAVMARQYVRNVVRSVQRVAMAIAPSRLSTTELGSKSLTSPPEALTLARWICRSYRLHTCSDLFRVESTSGDAILKQLWHHSDAVLCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESGRKVLCIEFSKIMEQGFAYLPAGICVSSMNRPVSYEQAIVCKVLDDHDSNHCLAFVFMNWSFV* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2540 847 Gene3D - 15 85 - -
Pvu2g2540 847 SMART HOX_1 16 82 IPR001356 GO:0003677
Pvu2g2540 847 Gene3D - 201 383 IPR023393 -
Pvu2g2540 847 CDD bZIP 71 110 - -
Pvu2g2540 847 Pfam START domain 167 375 IPR002913 GO:0008289
Pvu2g2540 847 CDD homeodomain 19 79 IPR001356 GO:0003677
Pvu2g2540 847 SUPERFAMILY Homeodomain-like 19 81 IPR009057 -
Pvu2g2540 847 Pfam Homeodomain 20 77 IPR001356 GO:0003677
Pvu2g2540 847 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289
Pvu2g2540 847 Pfam MEKHLA domain 702 846 IPR013978 -
Pvu2g2540 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 7 847 IPR044830 GO:0003700
Pvu2g2540 847 SMART START_1 166 376 IPR002913 GO:0008289
Pvu2g2540 847 ProSiteProfiles 'Homeobox' domain profile. 22 78 IPR001356 GO:0003677
Pvu2g2540 847 SUPERFAMILY Bet v1-like 167 378 - -
Pvu2g2540 847 Coils Coil 84 108 - -
Pvu2g2540 847 CDD START_ArGLABRA2_like 161 377 - -
Pvu2g2540 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 7 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2540 Pvu-Chr2 41323900 41330159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2540 1 847 Homeobox Transcription Factor Family AT2G34710 76.051 0.0 1327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu2g2540 START 8.5e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2540 K09338 - gmx:100807637 1570.06