Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2538 ATGACCTCTGCTCACAACCTTACTGATAATGAAGATGATGGGCAGCACCAGTCAGAATCCCAAGTGCAGTCCCCATCTGCTAATGGAATTTCTGATTCCGGTATTAGTACCCAGAATGTCAATGTACAGTATGCAACACCTGGCCAGCTTGGAGCTGGGCATGCAATGGTACCACCTGTGTATCCATATCCAGATCCTTATTACAGAAGCATCTTTGCTCCCTATGATACTCAACCTTATCCCCCACAAGCCTATAGTGGACAGCCAATGGTTCATCTTCAGTTAATGGGGATTCAGCAAGCTGGCGTCCCTCTGCCAACTGATGCAGTAGAGGAGCCTGTGTTTGTCAATGCAAAACAATATCACGGTATATTGAGACGTAGACAATCCCGTGCTAAAGCTGAATCAGAAAATAAAGCTATAAGAAATAGGAAGCCATACTTGCATGAATCTCGACACATGCACGCACTGAGAAGACCGAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAGAAGAGAATGAGCATAATGATGTGGCATCAGCTGAGAAATCACAATCCAATATCAATCTCAATTCTGATAAAAATGATCAAACGTCATCAGATAGGACATCCTGA 621 0.438 MTSAHNLTDNEDDGQHQSESQVQSPSANGISDSGISTQNVNVQYATPGQLGAGHAMVPPVYPYPDPYYRSIFAPYDTQPYPPQAYSGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHMHALRRPRGCGGRFLNSKKEENEHNDVASAEKSQSNINLNSDKNDQTSSDRTS* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2538 206 MobiDBLite consensus disorder prediction 1 35 - -
Pvu2g2538 206 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
Pvu2g2538 206 MobiDBLite consensus disorder prediction 166 181 - -
Pvu2g2538 206 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 2 188 - -
Pvu2g2538 206 Gene3D - 110 171 - -
Pvu2g2538 206 MobiDBLite consensus disorder prediction 128 147 - -
Pvu2g2538 206 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Pvu2g2538 206 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
Pvu2g2538 206 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
Pvu2g2538 206 MobiDBLite consensus disorder prediction 17 35 - -
Pvu2g2538 206 MobiDBLite consensus disorder prediction 182 200 - -
Pvu2g2538 206 MobiDBLite consensus disorder prediction 152 206 - -
Pvu2g2538 206 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 188 IPR001289 GO:0003700|GO:0006355
Pvu2g2538 206 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Pvu2g2538 206 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2538 Pvu-Chr2 41296680 41302122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2538 2 206 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.488 5.32e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pvu2g2538 CBFB_NFYA 3.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2538 K08064 - gmx:100499754 394.045