Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2536 ATGAAAACAGGGTCTCTTACAGGTAAAAGAAGAGTGAAGGATTTATTGCTTCAACAACATAATCGTTTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCAGCGAATATTGGAGTTTTTGTATGCTTAAAATGTTGTGGTGTGCACAGAAGTCTTGGTTCTCATGTATCAAAGGTTTTGTCTGTGACATTGGATGAATGGTCAAGTGATGAAATAGATGCAATGGTTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTACATTCCACAAGGATGTACAAAACCTGGACCAGATGCCACTCATGAGCAGCGCACGAAATTCATCCGGTTAAAGTATGAAAGTCAAGCCTTTTTGAAACCTAGTTTGCGCATTATGTCGGGAAAAATGAATCCTCCGTCAAGCATTACCAAAGGGATTAAGGATAATCTTCGAAGTAGTAGTGGCTCACGTGAGGATGGAGTGGCAGGATTTATTGGAAAGTTGAAGGTAAAAGTGATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACCAGTGATCCATATGTTATCTTCACACTTGGCCAACAGACTGTTCAGACAACTGTAGTAAATAGTAATTTGAATCCAGTCTGGAATGAAGAACTTATGCTGTCTGTTACTCAGCAATTTGGATTATTGAATTTGAAGGTATTTGATTATGACTTACTTTCAGCTGATGATATAATGGGGGAAGCAGACATTGATCTTCAACCCCTGATTACATCTGCAATGGCCTATGGAGATCCTAGAATGTTTGATAATATGCAGATAGGAAAATGGATGAAATCCCATGACAATGCGCTTATAGATGATAGCGCAGTCAATATTGTTGATGGTAAGGTTAAACAGGAGATATTTATCAAGCTCCAGAACGTTGAATCTGGAGAATTAGAGTTAGCACTTGAGTGGATACCTCTTGAGTCTTGA 966 0.3872 MKTGSLTGKRRVKDLLLQQHNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGSHVSKVLSVTLDEWSSDEIDAMVEVGGNSSANSIYEAYIPQGCTKPGPDATHEQRTKFIRLKYESQAFLKPSLRIMSGKMNPPSSITKGIKDNLRSSSGSREDGVAGFIGKLKVKVIKGTDLAIRDMMTSDPYVIFTLGQQTVQTTVVNSNLNPVWNEELMLSVTQQFGLLNLKVFDYDLLSADDIMGEADIDLQPLITSAMAYGDPRMFDNMQIGKWMKSHDNALIDDSAVNIVDGKVKQEIFIKLQNVESGELELALEWIPLES* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2536 321 Pfam C2 domain 165 256 IPR000008 -
Pvu2g2536 321 ProSiteProfiles C2 domain profile. 145 265 IPR000008 -
Pvu2g2536 321 SMART arf_gap_3 10 131 IPR001164 GO:0005096
Pvu2g2536 321 SUPERFAMILY ArfGap/RecO-like zinc finger 9 126 IPR037278 -
Pvu2g2536 321 CDD ArfGap 12 118 - -
Pvu2g2536 321 PRINTS HIV Rev interacting protein signature 21 40 IPR001164 GO:0005096
Pvu2g2536 321 PRINTS HIV Rev interacting protein signature 40 57 IPR001164 GO:0005096
Pvu2g2536 321 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Pvu2g2536 321 ProSiteProfiles ARF GTPase-activating proteins domain profile. 9 123 IPR001164 GO:0005096
Pvu2g2536 321 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 165 309 IPR035892 -
Pvu2g2536 321 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 5 320 - -
Pvu2g2536 321 SMART C2_3c 166 261 IPR000008 -
Pvu2g2536 321 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Pvu2g2536 321 Gene3D C2 domain 164 321 IPR035892 -
Pvu2g2536 321 Pfam Putative GTPase activating protein for Arf 10 125 IPR001164 GO:0005096
Pvu2g2536 321 CDD C2_ArfGAP 164 308 - -
Pvu2g2536 321 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 5 320 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2536 Pvu-Chr2 41279316 41284717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2536 7 320 C2H2 Transcription Factor Family AT4G21160 69.444 6.25e-174 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2536 K12486 - gmx:100806567 525.013