Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2509 ATGGGAATTCAGGGGTTTTTGCCGCTATTGAAATCGATTATGGTTCCAATCAATATCAAGGACTTGAAGGGTTGTTCTGTGGCGGTAGATACCTACTCTTGGCTCCACAAAGGTGCCCTTTCTTGCAGCACCGAACTATGCAAAGGGATACCCACTACCAGGCACATTGAGTATTGCATGCACAGAGTCAATTTGCTGCGCCATTATGGGGTTAAGCCCATTTTAGTGTTTGATGGGGGGCTTCTGCCAATGAAGAGTGAACAAGAGATCAAGCGTGCCAGGGTTAGAAAGGACAATTTTGCACGTGCAGTTGAACATGAATCAGACGGAAATTCAGCTGCTGCTTATGAGTGCTACCAGAAAGCAGTTGATATTTCTCCCCAAGTTGCACTTGAACTAATTCAGGTATTGAAGCAGGAGAATGTGCAGTATATTGTTGCTCCTTACGAGGCAGATGCCCAGATGACATTCTTGGCAATTAGTGGACAAGTTGATGTAGTTATAACTGAAGATTCTGATCTTATACCATTTGGCTGCCCTAGAATTCTCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTCCAGTACTCCATGCTACAAAAGAATAAGGAGCTTAGTTTCGAGGGGTTCAACAGACAAATGGTTCTTGAAATGTGTATTTTGAGTGGGTGTGACTATCTTCAGTCCTTGCCAGGTATGGGTCTTAAAAGAGCCCATGCAAGCATAAAAAAATTTAGAAGTTATGACAAGGTTCTTAAGCATTTGAGATACAGTGGAGTTTCTGTGCCTCCCTTTTATGAAGAGTCATTCAAGAAGGCATTACATACTTTCCAATATCAACGAGTTTATGATCCAATTAATGAAAATATTGTCCATTTGTCTAAGATACCTGATGATATTGGTGTCGAGTTAGACTTTTTAGGCCCACCCATGCCAAAAGATATAGCACAAAGAATAGCAAAAGGGGATCTTGATCCAATTACCAAAATGCCATTTGAGGGAGAGAATCTTACAGCCAGATTGGCAATTGCAGGAACTAGTCAATTCAAAACTCCTCATTCTGAAAGTACAAAGAAAAAGATTGATTTGCCCGTGCAGAAGAATCTCTTGACCAAGTATTTTTGTGTTGCTTCTCTTGAAGCAAAAAGGAAATTCAGAGCACCTCGGGTGTCACCTACTGCTGCTAAGGAAACAAAGAATTGTACTGCATCACTCATTCACTCTGAGAATTGGGGAAGTGCCTGTCATCCTAATAGCCATATTGAATATGATTCTGCCACAAAAATTTCTGAATTTACAGAGTCTCCATACCATGTTTCTATGGTGGGTGAGGAGAAGAAAAGCCCTGAACATGCAGTACTGCAACAGCCCAGGCAGCCAATTCATAAACCGTGTTTGGGTTTGCACAAGGAGCATGGACGCACTAATGTCCAAGACACAGTAGAAGAAAAAACCAGGGAGGCAACTGGAAAGGTTATTGTTAGGAGTGCTTATTTTCAGCACAAGCAAGTGGAAAAGAATGTTTGTGATGAGAAACATGAGTACCAGTCCTCTAGCATTGTCCTTGAAGGGAGAAAAAATGCCATATCTGACAGTGATTTATGTAATGATCATTTGAAGAATAAAAACCAGGGATTTCATGACATAGTTGAAGGAAAAACCAGGGAGACAACAAGAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAAACAAGTGGAAAAAAATGTTTGTGACGAGAAACAAGAGTACCAGTCCTCTGGCATTGTCATTGATGAGAGAAAAAATGCCATATCTGACACCGATTTATGTAATAGCCATTTGAAGAATAAAGACCAGGGATTCCATGACATAGTTGAAGGAAAAACCAGGGAGACAAGAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAAGCAAGTAGAAAAGAATGTTTGTGATGAAAAACAAGATTACCCATCCTCTGGCATAGTCATTGACAACAGAAGAAGTGCCATATCTGACAGTGATTTATGTAACAACCATTTGAAAAATAAAGACTTGAAAAGGAAGATATTCCCTAATGACAATATTCAACATGAAAATTTGCACCTCAGGCAAACGCAGCGTGCTTCACCTCCTCATATTAACGGTTGCTGTGATCACAATGTTGAAGGACCATTTACAGAGAATAGTAGTGAAGAAAAATTCGGGACAAACATTTCCCATCTGGGTCAGTATTCAGAAATAGCTGAGAAGTCTATGGAAAGATTTGTCTCTGTGATATCATCCTTTAGATGCACTTCTGGCACTCGTGTCAGTGGTCTCCGTGCTCCGGTGAAAGATCTTCCGAACACTTCTAATAATAGGCAAAAAACCGTGGACTTTGGACAATATGCATATGTGCCAAAGCACACAAAGACTAGAAGAATAGCACCTGGGAATTAA 2430 0.4033 MGIQGFLPLLKSIMVPINIKDLKGCSVAVDTYSWLHKGALSCSTELCKGIPTTRHIEYCMHRVNLLRHYGVKPILVFDGGLLPMKSEQEIKRARVRKDNFARAVEHESDGNSAAAYECYQKAVDISPQVALELIQVLKQENVQYIVAPYEADAQMTFLAISGQVDVVITEDSDLIPFGCPRILFKMDKFGQGVQFQYSMLQKNKELSFEGFNRQMVLEMCILSGCDYLQSLPGMGLKRAHASIKKFRSYDKVLKHLRYSGVSVPPFYEESFKKALHTFQYQRVYDPINENIVHLSKIPDDIGVELDFLGPPMPKDIAQRIAKGDLDPITKMPFEGENLTARLAIAGTSQFKTPHSESTKKKIDLPVQKNLLTKYFCVASLEAKRKFRAPRVSPTAAKETKNCTASLIHSENWGSACHPNSHIEYDSATKISEFTESPYHVSMVGEEKKSPEHAVLQQPRQPIHKPCLGLHKEHGRTNVQDTVEEKTREATGKVIVRSAYFQHKQVEKNVCDEKHEYQSSSIVLEGRKNAISDSDLCNDHLKNKNQGFHDIVEGKTRETTRKVIVRSAYFQHKQVEKNVCDEKQEYQSSGIVIDERKNAISDTDLCNSHLKNKDQGFHDIVEGKTRETRKVIVRSAYFQHKQVEKNVCDEKQDYPSSGIVIDNRRSAISDSDLCNNHLKNKDLKRKIFPNDNIQHENLHLRQTQRASPPHINGCCDHNVEGPFTENSSEEKFGTNISHLGQYSEIAEKSMERFVSVISSFRCTSGTRVSGLRAPVKDLPNTSNNRQKTVDFGQYAYVPKHTKTRRIAPGN* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2509 809 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Pvu2g2509 809 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Pvu2g2509 809 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 783 IPR006084 -
Pvu2g2509 809 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 334 IPR036279 -
Pvu2g2509 809 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Pvu2g2509 809 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Pvu2g2509 809 Gene3D - 209 281 - -
Pvu2g2509 809 Gene3D - 1 207 - -
Pvu2g2509 809 SMART xpgineu 138 208 IPR006086 GO:0004518
Pvu2g2509 809 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Pvu2g2509 809 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Pvu2g2509 809 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Pvu2g2509 809 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Pvu2g2509 809 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Pvu2g2509 809 SMART xpgn3 1 99 IPR006085 GO:0004518
Pvu2g2509 809 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Pvu2g2509 809 PANTHER EXONUCLEASE 1 1 783 IPR032641 GO:0006281|GO:0035312
Pvu2g2509 809 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Pvu2g2509 809 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2509 Pvu-Chr2 41060275 41074106 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2509 1 264 Core DNA Replication Machinery Family AT5G26680 27.437 4.75e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2509 K10746 - gmx:100798062 1118.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2509 2 41060275 41074106 Pvu2g2509 2 41060275 41074106 ECH