Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2490 ATGATGGATGAGGCACTGGGTAGTTCATGTTCCCTGCCCCCTTTCCTGGCAAAGACTTATGAGATGGTGGATGATCTTTCCACGAATTCAATTGTTTCGTGGAGTGTCTCTAGCAAAAGTTTCATTGTGTGGAATCCTCCAGAATTTGCAAGGGATTTGCTTCCTAGATTCTTTAAGCACAATAACTTCTCAAGTTTCATCAGGCAGCTCAACACATACGGATTTAAGAAAATTGACCCGGAACAATGGGAATTTGCCAATGATGATTTTGTAAGAGGGCAACCTCATCTTATGAAGAACATTCATAGACGGAAGCCGGTTCATAGCCATTCTTTGCAGAATCTCCAAGCACAGGGCCCATTACAGGACTCGGAAAGGCAGGGTTTTACTGATGGAATAGAGAAGCTTAAACGTGATAAAGAGCGACTTCTAGTCGAGTTGCAGAAATTTCAGCATGAGTGGCAGACATATGAGATACAAATACATTGCTCGAACGATAGGTTGGAAAAGTTGGAACAAAAACAACACAAGATGGTTTCTTCGGTTTCTCATGTATTGCAGAAACCTGTGATTGCTGTAAATATCTTACCTCTGACAGAAACTATGGATAGAAAACGAAGGTTACCGAGAAGTGGCCACTACTATGATGAAGCTAGTATTGAAGATGCTATTGAAACTTCTCAAATGTTACCTAGAGAAAATGCAGAGAATACCACTCTCTTGGCATTAAATGTGGAGCGATTGGATCAGCTTGAATCGTCCGTGGCATTTTGGGAGGCTATTGCACATGATATTGGCGATAACTTCGCTCAAATTCAGTCCAACATGGATTTTGATGAATCTACAAGTTGTGCTGATAGTCCATCCATATCTTGTGCGCAATTAGATGTTGATGTTCGGCCTAAATCATCTGGAATTGACATGAACTCTGAGCCAACTGCAGCTGCTGTTCCCGATCCACTTGCATCAAAAGATCAACCTGCAGGAATCACTGTCGCGGCGACTGGAGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGGATCCTGGTGCATCAGAAACACAGGAAGTGCAGTCAGAAAGAAAGGATTGTGATGGCAGAAAAAATGAAGGAAAACCTAATGACCATAGCAAATTTTGGTGGAATATACGGAGTGCAAATAATCTTTCAGAACCGATGGGGCATGTTGGTCAAGCAGAGAAAACTTAG 1212 0.42 MMDEALGSSCSLPPFLAKTYEMVDDLSTNSIVSWSVSSKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFKKIDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQGPLQDSERQGFTDGIEKLKRDKERLLVELQKFQHEWQTYEIQIHCSNDRLEKLEQKQHKMVSSVSHVLQKPVIAVNILPLTETMDRKRRLPRSGHYYDEASIEDAIETSQMLPRENAENTTLLALNVERLDQLESSVAFWEAIAHDIGDNFAQIQSNMDFDESTSCADSPSISCAQLDVDVRPKSSGIDMNSEPTAAAVPDPLASKDQPAGITVAATGVNDVFWEQFLTEDPGASETQEVQSERKDCDGRKNEGKPNDHSKFWWNIRSANNLSEPMGHVGQAEKT* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2490 403 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g2490 403 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g2490 403 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g2490 403 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g2490 403 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 2 384 - -
Pvu2g2490 403 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 384 IPR027725 -
Pvu2g2490 403 Gene3D - 8 105 IPR036388 -
Pvu2g2490 403 MobiDBLite consensus disorder prediction 348 380 - -
Pvu2g2490 403 SUPERFAMILY "Winged helix" DNA-binding domain 11 104 IPR036390 -
Pvu2g2490 403 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g2490 403 Coils Coil 133 153 - -
Pvu2g2490 403 MobiDBLite consensus disorder prediction 355 378 - -
Pvu2g2490 403 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2490 Pvu-Chr2 40885716 40887971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2490 8 403 HSF AT4G18880 52.228 2.79e-123 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu2g2490 HSF_DNA-bind 2.9e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2490 K09419 - gmx:100798004 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2490 2 40885716 40887971 Pvu2g2490 2 40885716 40887971 ECH
Pvu6g1781 6 28240620 28242883 Pvu2g2490 2 40885716 40887971 ECH
Pvu2g2490 2 40885716 40887971 Pvu6g1781 6 28240620 28242883 PCT