Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2488 ATGGCTTCGGCGGCTATATTTTCGTCGCTTCGGCGGCGCCGGTCGCCATCGCTGGAGGCGTTTATTGTGCCGGTTGACCTCTCTGAGGTGGCGCTGCTGGAGACACTTATCTACGTCGCCGGAGACGTTGTATCATGCTTCTCCGACAATCGGTTTCCCTTCCAGCGCCGGAACTCGCGTGCCCTCGTCGGAAAAGTGGAGATTTTTCGGTCAATGTTGGAGTGCTTGAGAGACTCCACCGACGGTGGCGTTCTTCTCCCCACGGCGGTGCTGTGCCTAAAGGAGCTTTATTTGCTACTATATCGCTCCAAGATTCTCCTTGATTACTGTGCCCGATCGAGCAAGTTGTGGCTCTTGCTTCAGAACCATTGTGTTTCTGGTCACTTCCATGATTTGAGTCAAGAATTTTCGACCCTTTTGGATGTTTTTCCTGTTGGAGAGATTGGACTCAGTGATGACGTTAGGGAACAGGTTGAGTTGTTGCAGAGACAGTCCAGAAGGGCTAAGTTGTTCATAGATAAGAAAGATGATGCCCTTAGGACAAGGTTCTTTTGGTTTCTTGATGAATTTGAAAGTGGGAGGGTTCCTGATTCTAAGGACTTGAGGTGTTTCTTTGTGGATAAGTTGCAGATGCTCGATGCTAAGAGTTGTAGGGTGGAGGTCGAAGCCTTGGAGGAGCAGATTGTGAACCACGAGGGTGATGTTGAGCCAACAGTTCCTGTGCTTAATGGGATGGTGGCTATCACAAGGTATTGTAGGTTTTTGTTATTTGGGTTTGAGGACGAATTGGAAATTGAGATTCAGAAGAGGGCGAGGAAGAGGTTGATTACTCAGGAAATTGCTGAAACATTTTTTACTGTTCCTAAGGACTTTTGCTGTCCGATAACACTGGATTTGATGTGTGATCCTGTAATAATTTCTACCGGTCAAACTTATGATAGGAGGTCTATATGGAGGTGGATGGAGGAGGGGCATTGCACTTGTCCCAAAACTGGGCTATTGCTTTCACATAACAGGCTTGTTCCTAATCGTGCTCTTAGGAATTTGATTATGCAGTGGTGCAGCGCACATGGCGTGCCCTATGATCCACCTGAAGGGGTTGATCCATCTGTTGAGATGTTTGCATCAGCTTGTCCCTCCAAAGCTTCCCTTGAAGCTAACCGAGAGACGGCCATGCTTCTCATTCAGCAGCTTGCTGATGGGTCTCAAGTTGCAAAGACTGTGGCTGCCAGGGAGATAAGATTGCTGGCCAAAAATGGAAAGGAAAACCGTGCCTTCATTGCGCAAGCTGGGGCAATTCCTCATCTTAGGAACTTGCTTTCCTCTCCCAATTTTGTTGCACAGGAGAATTCTGTGACTGCACTGCTCAATTTATCCATTTTTGAAAGAAATAAGAGTATGATCATGGAGGAAGGGTGTTTGGGATCAATTGTTGAGGTGTTGCAATTCGGGCACACGACTGAGGCAAGGGAGAATGCTGCTGCAACATTGTTCAGCCTCTCTGCTGTCCATGAGTATAAGAAACGAATTGCGGATAATGTGGGAGCTGTTGAAGCATTGGCATGGTTGTTGCTACAGGGAACTCAAAGAGGGAAGAAGGACGCTGTCACAGCATTATTTAATCTCTCCACCCATACTGAGAATTGTTTGAGAATGATAGAGGCAGGGGCAGTGAAAGCTATGGTCGTCGCTTTGGGGAATGAAGGAGTTTTTGAGGAAGCAGCTGGTGCCTTGGCCTTAATTGTTCGGCAGCCTATTGGCGCCATGGCAGTGGTGGGGGAGGAAGCAGCAGTAGGTGGATTGCTAGGAATTATGCGTTGTGGAACGCCAAGAGGTAAAGAGAATGCAGTTGCAGCCTTGCTGGAGCTGTGCAGGAGTGGTGGTGCAGCTGCAACAGAAAGGGTGGTTAGGGCGCCTGCCTTGGCCGGCTTGCTTCAAACCTTGCTTTTTACAGGGACAAAGAGGGCAAGAAGAAAGGCTGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTACATTATGGTGGATTGGGTGTGGGTTATGCATTTGCTAGCGATTCAGCTTCAACCAGGAATACTACAAGCTTTGGAATTTATAAGCACCATTCTGCGTCCTCGTTGTGTTGA 2136 0.4789 MASAAIFSSLRRRRSPSLEAFIVPVDLSEVALLETLIYVAGDVVSCFSDNRFPFQRRNSRALVGKVEIFRSMLECLRDSTDGGVLLPTAVLCLKELYLLLYRSKILLDYCARSSKLWLLLQNHCVSGHFHDLSQEFSTLLDVFPVGEIGLSDDVREQVELLQRQSRRAKLFIDKKDDALRTRFFWFLDEFESGRVPDSKDLRCFFVDKLQMLDAKSCRVEVEALEEQIVNHEGDVEPTVPVLNGMVAITRYCRFLLFGFEDELEIEIQKRARKRLITQEIAETFFTVPKDFCCPITLDLMCDPVIISTGQTYDRRSIWRWMEEGHCTCPKTGLLLSHNRLVPNRALRNLIMQWCSAHGVPYDPPEGVDPSVEMFASACPSKASLEANRETAMLLIQQLADGSQVAKTVAAREIRLLAKNGKENRAFIAQAGAIPHLRNLLSSPNFVAQENSVTALLNLSIFERNKSMIMEEGCLGSIVEVLQFGHTTEARENAAATLFSLSAVHEYKKRIADNVGAVEALAWLLLQGTQRGKKDAVTALFNLSTHTENCLRMIEAGAVKAMVVALGNEGVFEEAAGALALIVRQPIGAMAVVGEEAAVGGLLGIMRCGTPRGKENAVAALLELCRSGGAAATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASDSASTRNTTSFGIYKHHSASSLC* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2488 711 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Pvu2g2488 711 Coils Coil 214 234 - -
Pvu2g2488 711 Gene3D - 529 654 IPR011989 -
Pvu2g2488 711 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Pvu2g2488 711 Gene3D - 366 528 IPR011989 -
Pvu2g2488 711 SUPERFAMILY RING/U-box 276 361 - -
Pvu2g2488 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Pvu2g2488 711 PANTHER U BOX DOMAIN-CONTAINING 11 691 - -
Pvu2g2488 711 SUPERFAMILY ARM repeat 393 667 IPR016024 -
Pvu2g2488 711 CDD RING-Ubox_PUB 291 332 IPR045210 -
Pvu2g2488 711 SMART arm_5 461 502 IPR000225 GO:0005515
Pvu2g2488 711 SMART arm_5 504 544 IPR000225 GO:0005515
Pvu2g2488 711 SMART arm_5 420 460 IPR000225 GO:0005515
Pvu2g2488 711 SMART arm_5 545 583 IPR000225 GO:0005515
Pvu2g2488 711 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Pvu2g2488 711 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 691 - -
Pvu2g2488 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 361 IPR013083 -
Pvu2g2488 711 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2488 Pvu-Chr2 40856985 40860744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2488 1 695 U-box Gene Family AT1G29340 67.787 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2488 - - gmx:100797462 1241.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2488 2 40856985 40860744 Pvu2g2488 2 40856985 40860744 ECH
Pvu2g2488 2 40856985 40860744 Pvu6g1783 6 28255766 28259056 PCT