Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2467 ATGGATCTGGCAAAAAGCAAAGGCAGTGGTGAAGTTTTGGATCATGTTGATGAAAGGGTGGGTGAGGATTTTAACCAATTGGTTGAAGGAAATGCAATTGATGCAGGAGGTGGACATAGCTTGGGTGAAAGAGTTAGTGTAAGTGGGAAAGATGGGTCTCCTGAAGAAACGTGTAATGGTCTTGGTTTGAATGGGGAGCTAAAGGAGGGGCTACAAGAAGTTAGTGATCGGAACATGGGTGACCCTCAAGAAATTAATGATACATTACACGGGGTTGATCAAGGAACCAGTTATAGTTCAAGAAATTTGATTAGTGGGGAAGTGCCTGAGACTTTTGTTATAATAGATCCTTCCGCTCAGATTGATTGTGTCAGTGGAGAAAATACAAAATTGGAAGCTAAACCTAATGATTCAGGGTTGAGCAAGGTGTCCACGAAAGTAATAAAAGGGGTGTCTGAGATAGATAAAAATTCATGTGTGATTGATGTAAACCGTGGCAGCTGCGACGGTTTTAGTGAGAATTTGGAAGGTGAAATGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCATTAGAAGCAGCACCTATTGGCACTGTAAGTAGTGCTACTACTAATACAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAGTTAGGTATTGCTCACAATCATTGTGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCAAAGAATGTTTCGGACGTTGCTGATCATGGATTTATGGAAGAATGGAATGATACTAGATTCATTGGCAATGATAATACCTCATCCAGAAGGTTTGGTGGATGCTGGCGTGGACAACCATTTTGTAACTTCTTAATGGCATGCCTGGTTATAGCTTTTGTTCTACCATGGTTCTTTCGTGTAAATATGTTCTAG 933 0.4105 MDLAKSKGSGEVLDHVDERVGEDFNQLVEGNAIDAGGGHSLGERVSVSGKDGSPEETCNGLGLNGELKEGLQEVSDRNMGDPQEINDTLHGVDQGTSYSSRNLISGEVPETFVIIDPSAQIDCVSGENTKLEAKPNDSGLSKVSTKVIKGVSEIDKNSCVIDVNRGSCDGFSENLEGEMICRICHLASGQPLEAAPIGTVSSATTNTDLIQLGCACKDELGIAHNHCAEAWFKIKGNRLCEICGETAKNVSDVADHGFMEEWNDTRFIGNDNTSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2467 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 310 - -
Pvu2g2467 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 255 IPR013083 -
Pvu2g2467 310 SMART ringv_2 180 244 IPR011016 GO:0008270
Pvu2g2467 310 ProSiteProfiles Zinc finger RING-CH-type profile. 173 250 IPR011016 GO:0008270
Pvu2g2467 310 PANTHER ZINC FINGER, RING-CH-TYPE 1 310 - -
Pvu2g2467 310 Pfam RING-variant domain 200 243 IPR011016 GO:0008270
Pvu2g2467 310 SUPERFAMILY RING/U-box 178 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2467 Pvu-Chr2 40622682 40626399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2467 161 309 C3H Transcription Factor Family AT5G05830 38.462 5.77e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2467 - - gmx:100791129 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2467 2 40622682 40626399 Pvu2g2467 2 40622682 40626399 ECH
Pvu2g2467 2 40622682 40626399 Pvu6g1807 6 28475650 28478831 PCT