Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2466 ATGTCAGACCATAGCCAGAACAAGATGTCCACTTCTGTTGTCAATGTGAATGACTCCCTGACTGGTCACATCATATCCACTACAGTAGGAGGAAAAAATGGGAAGCCCAAACAGACTAGAAGATATCTGGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTGGCTAAGTGCGTGGAAACTGGGGAGCTAGTGGCCATTAAGAAGGTTTTACAGGACAGAAGATGTAAGAATCGTGAGCTACAGTTAATGCGCATGATGGACCATCCAAATGTGATCTCTCTGAAGCACCGTTTCTTTTCCACTACAAGTGCAGATGAACTATTTCTTAATTTGGTGATGGAATATGTTCCAGACTCTATGTACCGAGTCTCAAAGTTGTATACTAATACTAATCAGAGCATGCCACTTATCTTTGTGAAACTTTACATGCACCAGATTTTCCGGGGTCTGGCTTATATCCACACTGTCCCTGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGATCCTCATACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGATTAAAGGTGAAGCTAATTTATCACACATATGTTCACTTTTCTATCGGGCACCCGAACTAATATTTGGTGCCACTGAGTATACAACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCGAGCCATTATTTCCAGGCGATAATGCAGTGGACCAACTTGTAGAGATTATCAAGGTTCTTGGCACACCCTCTGAAGAGGAAGTTTGCTGTTCAAATTCGAACAATTTCAAGTTTTCACAGATATTCTGCAAAACAATGCCTCCAGAAGCAATTGATCTTACTTCCCAGCTTCTGCAGTATTCCCCAACACTTCGTTGTACTGCGCTAGAAGCATGTGCACATCCATTCTTTGATGAACTCCGGGAACCCAATGCTCTCTTGCCAGATGGTCGGCCATTTCCTCCTCTATTCAACTTTAAACAAGAGCTATCCGGAGCGTCTCAAGAGCTTATTGATAAGTTGATACCTGAACATGTGAAGCGGAAGATAGGGCTACCACCTACCCATTTTGGTGGAACATGA 1119 0.4307 MSDHSQNKMSTSVVNVNDSLTGHIISTTVGGKNGKPKQTRRYLAERIVGTGSFGIVFLAKCVETGELVAIKKVLQDRRCKNRELQLMRMMDHPNVISLKHRFFSTTSADELFLNLVMEYVPDSMYRVSKLYTNTNQSMPLIFVKLYMHQIFRGLAYIHTVPGVCHRDLKPQNILVDPHTHQVKICDFGSAKVLIKGEANLSHICSLFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGEPLFPGDNAVDQLVEIIKVLGTPSEEEVCCSNSNNFKFSQIFCKTMPPEAIDLTSQLLQYSPTLRCTALEACAHPFFDELREPNALLPDGRPFPPLFNFKQELSGASQELIDKLIPEHVKRKIGLPPTHFGGT* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2466 372 PANTHER SHAGGY-RELATED PROTEIN KINASE ETA 6 365 - -
Pvu2g2466 372 ProSiteProfiles Protein kinase domain profile. 42 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g2466 372 Gene3D Phosphorylase Kinase; domain 1 27 121 - -
Pvu2g2466 372 Gene3D Transferase(Phosphotransferase) domain 1 122 359 - -
Pvu2g2466 372 SUPERFAMILY Protein kinase-like (PK-like) 37 340 IPR011009 -
Pvu2g2466 372 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 6 365 - -
Pvu2g2466 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Pvu2g2466 372 ProSitePatterns Protein kinases ATP-binding region signature. 48 72 IPR017441 GO:0005524
Pvu2g2466 372 CDD STKc_GSK3 37 319 IPR039192 -
Pvu2g2466 372 Pfam Protein kinase domain 44 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g2466 372 SMART serkin_6 42 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2466 Pvu-Chr2 40606704 40613808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2466 48 325 Core Cell Cycle Gene Families AT1G76540 34.915 9.22e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Pvu2g2466 Pkinase 1.6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2466 K14502 - gmx:100810237 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2466 2 40606704 40613808 Pvu6g1810 6 28491210 28494006 PCT
Pvu6g1809 6 28489106 28490543 Pvu2g2466 2 40606704 40613808 PCT
Pvu6g2271 6 31838591 31844247 Pvu2g2466 2 40606704 40613808 PCT