Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2461 ATGTCAGATGAATATGATATGAGTGATGAACAGGTTGATGACAGTTCAATGGGATCATCCCAAAAGTGCTCATCCTTTGATTTGAATGAAGAAGCTAGTAGTGAAAATAATAGCAATGCTAATGATAAGATATATGAGGAAGCTAAGGATGAAGGTACTTCAACAAATAAAAGTAGCAGCATAACAAGGGAAGGAAATAATGAACGAAGAGGTGGTGTGAGACAATATGTTAGATCAAAGATGCCTAGACTTCGTTGGACACCTGAACTTCATCTTTCTTTTGTGCATGCTGTTGAAAGGCTTGGAGGTCAAGAGAGAGCAACACCCAAATTGGTGCTTCAGCTAATGAATGTAAGAGGACTCAGCATTGCTCATGTCAAGAGTCATTTGCAGATGTATCGGAGCAAGAAACTAGATGAGGCCGGGCAAGTATTAAGCGAAACATACAAATCAACCCATGAACTTGGTCGTATTTCTCATATGACCCATCCTCGTCAACATTTTAAGATGGGAAATGGTGGAATTATTCTAGCAAGTGATTACAGCGAGCACAGTTATTTCCATGGTCTCTTGCATCCTTCGACCCTATCACATCCACATTCAAAAGCCATCGACTCAAGGCACCAAAAATGGTACTTCAATAATCATCAACCTTTTAGAAAACCAAGTTACTCTAGCAACGAAGTTGCCTCAGCAGCCTTACAACCGCAAGCAAGATCAATGTCTTCAAACCAAATGGATGCTACCAGCATTGTACCCATGAGACCAAGCCAGTTTCTTGAAGGGAAAAGATGGCCTCCATTAGAAATTATGAACAATCACCCCTGGAAGAAAAGGTTACCTTCTAATACTGAGTCACAATCTGTGTTACTTCATCAATTTGGCACCACTACTCCAGCATCTCTTAGACCAAGTGACTTGAACTTCGCAAACAAAACAAGAATCAGGGAACATATATCTAACTCTGATGAGCATCGCAGCTATTCGAACAGTTCCAAGCTAGAATTTGAACCTCCATTTCGGATTAAGTCGAATCAAGAAAAAATGCAGAAAGAGAAGCAGTGGATGCCTGATTTGCGACTGAGTTTAAGTCAGAGAGATGGCAACAATGATGAGAAGACGGATCATTGCAGAGAAACCCAAGAAATCAACACGAAACTTTCACTTTCCTAG 1173 0.4049 MSDEYDMSDEQVDDSSMGSSQKCSSFDLNEEASSENNSNANDKIYEEAKDEGTSTNKSSSITREGNNERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSETYKSTHELGRISHMTHPRQHFKMGNGGIILASDYSEHSYFHGLLHPSTLSHPHSKAIDSRHQKWYFNNHQPFRKPSYSSNEVASAALQPQARSMSSNQMDATSIVPMRPSQFLEGKRWPPLEIMNNHPWKKRLPSNTESQSVLLHQFGTTTPASLRPSDLNFANKTRIREHISNSDEHRSYSNSSKLEFEPPFRIKSNQEKMQKEKQWMPDLRLSLSQRDGNNDEKTDHCRETQEINTKLSLS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2461 390 Pfam Myb-like DNA-binding domain 84 134 IPR001005 -
Pvu2g2461 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 138 IPR017930 -
Pvu2g2461 390 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 390 - -
Pvu2g2461 390 SUPERFAMILY Homeodomain-like 80 136 IPR009057 -
Pvu2g2461 390 MobiDBLite consensus disorder prediction 318 390 - -
Pvu2g2461 390 MobiDBLite consensus disorder prediction 1 74 - -
Pvu2g2461 390 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 82 137 IPR006447 GO:0003677
Pvu2g2461 390 Gene3D - 81 138 - -
Pvu2g2461 390 MobiDBLite consensus disorder prediction 12 41 - -
Pvu2g2461 390 MobiDBLite consensus disorder prediction 340 355 - -
Pvu2g2461 390 MobiDBLite consensus disorder prediction 365 382 - -
Pvu2g2461 390 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 390 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2461 Pvu-Chr2 40525230 40533557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2461 19 139 G2-like Transcription Factor Family AT2G42660 57.377 9.96e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu2g2461 Myb_DNA-binding 2.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2461 - - pvu:PHAVU_002G239100g 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2461 2 40525230 40533557 Pvu2g2461 2 40525230 40533557 ECH
Pvu6g1818 6 28579128 28583690 Pvu2g2461 2 40525230 40533557 ECH
Pvu2g2461 2 40525230 40533557 Pvu6g1818 6 28579128 28583690 PCT