Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2458 ATGAACGCCATGGCAGAGCTCAGTCCCAAGAAGGAAAATCCGAACCTTCTGCTGGGCCGGTTCGAGCTGGGAAAACTCCTGGGGCACGGAACCTTCGCGAAGGTTCACCACGCCAGGAACATCAAAACCGGAGAAGGAGTGGCCATCAAGATCATAAACAAGGAAAAGATCCTCAAGGGCGGTTTGGTGTCCCACATCAAGCGCGAGATCTCCATCCTCCGCCGCGTCCGCCACCCCAACATCGTCCAACTCTTCGAAGTTATGGCCACCAAAACCAAGATCTACTTCGTCATGGAGTTCGTACGCGGCGGCGAGCTCTTCAACAAGGTCGCCAAGGGAAGGTTGAAGGAAGAAGTTGCCAGAAAGTACTTCCAGCAGTTGGTTTCCGCGGTGGAGTTCTGCCACGCACGCGGGGTGTTCCACAGGGACATCAAGCCCGAGAATTTGTTGCTGGATGAGGATGGAAACCTTAAAGTCTCCGACTTCGGACTCAGTGCTGTGTCGGATCAGATTAGGCAGGACGGGCTGTTCCACACGTTTTGTGGGACACCTGCGTATGTTGCTCCTGAGGTTTTGGCGCGGAAAGGGTACGATGGTGCCAAGGTTGATATTTGGTCTTGTGGGGTTGTTTTGTTTGTTTTGATGGCGGGTTATTTGCCTTTCCATGACCATAATGTTATGGCCATGTACAAGAAGATTTACAGGGGTGAGTTTCGGTGTCCCAGGTGGTTCTCTCCTGAACTTGCTAGACTTCTCTCTAGGCTTCTTGATACCAACCCCCAGACCAGGATTTCTATTCCTGAAATCATGGAGAATCGCTGGTTCAAGAAGGGTTTCAAGCAAATAAAGTTCTATGTGGAGGATGATAGAGTTTGTAGCTTTGATGATAAGTTGCAGTTGCATCCCCATGATGGCGGTGGGGATGATGATTTGGCAACATCGGATTCCGAGGTTGAAATTAGGAGGAAGAATAGTCATCATGCTTCCTTGCCAAGGCCTGCTAGTTTGAATGCATTTGACATCATATCGTTTTCTCAGGGCTTTGATCTCTCTGGGTTGTTTGAGGAAAAGGGGGATGAGGCCAGGTTTGTGTCTTCTGCTCCAGTGTCTAAGATTATATCCAAATTGGAGGAGGTTGCTCAGTTGGTTAGCTTCACGGTGAGGAAGAAAGATTACAGGGTGAGCTTGGAGGGCTCTAGAGAAGGCGTGAAGGGGCCTTTGACCATTGCTGCTGAGATTTTTGAGTTGACACCTTCCTTGGTGGTGGTGGAGGTGAAGAAAAAAGGAGGGGATAAGGCAGAGTATGACAAGTTTTGTAACTCTGAGTTGAGACCCGCGTTGGAGAATTTGGTAATGGAGGAATCTGCTTCTTCGTCCTACCAATCTACACATCTTGAATCTGAACTGCATCAACGAACACTCTCTGACTCTGCCCTTAACATTCATTCAGATAGTGAAAGCCTGTACCAACAAAACTTGGCTGAAATAGAAAAAACTACTATCCGAAAACATGGTGAATCAATATTCGAAATCTCATAG 1539 0.4828 MNAMAELSPKKENPNLLLGRFELGKLLGHGTFAKVHHARNIKTGEGVAIKIINKEKILKGGLVSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEFVRGGELFNKVAKGRLKEEVARKYFQQLVSAVEFCHARGVFHRDIKPENLLLDEDGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDIWSCGVVLFVLMAGYLPFHDHNVMAMYKKIYRGEFRCPRWFSPELARLLSRLLDTNPQTRISIPEIMENRWFKKGFKQIKFYVEDDRVCSFDDKLQLHPHDGGGDDDLATSDSEVEIRRKNSHHASLPRPASLNAFDIISFSQGFDLSGLFEEKGDEARFVSSAPVSKIISKLEEVAQLVSFTVRKKDYRVSLEGSREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDKAEYDKFCNSELRPALENLVMEESASSSYQSTHLESELHQRTLSDSALNIHSDSESLYQQNLAEIEKTTIRKHGESIFEIS* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2458 512 CDD CIPK_C 337 447 - -
Pvu2g2458 512 Gene3D Kinase associated domain 1, KA1 331 452 - -
Pvu2g2458 512 Pfam NAF domain 333 389 IPR004041 GO:0007165
Pvu2g2458 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Pvu2g2458 512 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Pvu2g2458 512 Gene3D Transferase(Phosphotransferase) domain 1 11 328 - -
Pvu2g2458 512 SMART serkin_6 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g2458 512 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 15 455 - -
Pvu2g2458 512 CDD STKc_SnRK3 20 274 - -
Pvu2g2458 512 PANTHER - 15 455 - -
Pvu2g2458 512 ProSiteProfiles NAF domain profile. 331 355 IPR018451 GO:0007165
Pvu2g2458 512 ProSiteProfiles Protein kinase domain profile. 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g2458 512 Pfam Protein kinase domain 22 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g2458 512 SUPERFAMILY Protein kinase-like (PK-like) 17 276 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2458 Pvu-Chr2 40493517 40495346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2458 7 454 CBL-interacting serine-threonine protein kinases AT4G18700 78.842 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pvu2g2458 Pkinase 1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2458 - - gmx:100807567 873.618