Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2443 ATGGGTGTGGAAGATCAAAAGCAAAGGGCGAAGGATGAGAGATTGTGTGAGAAAGTGAAGATGAAGAACAAGAGGAAGTTTGTTGGGGTGAGACAAAGGGCTTCAGGGAAATGGGCAGCAGAGATCAAAGACACTTCAAAGAAGATTAGGATGTGGCTTGGTACTTATCAAACTGCTGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCTTGTCTCCTTAGAGGTTCAAACACTCGCACCAATTTCTCTACTCAAAGCTCTACTACCATTTCTACAAATTCTCCTATATCTCTAAAACTTACAAATCTCCTTCATCGTAAAGCCATGTCAAATCAAACTCAACTTCAAAACCATCCCTCTGCTATAACTCCAACTTTTCAAGGTGCAACTGCTCCCAATAACATCATGGTCATGGAACAAACCTCTGCTTCTAGTGGTCAAGCTCAGTCTTTGTTTGTGGTTCAGAACCAAGTCTCTAATAACTTGTATGGACTAGATATGAATATGATCGATTGTGCCATGGGTATCACACAAAATGCATCGCAGCTTCATTTCTCTTGGCCTTTAGCCCAACAAAGGATTAACGAATTACCATTATCAAAAGATGGTTTCAATTTAGAAGGGCAGTTATCAGACTCGGTGTATGCCACCAATGAGTACCACCATTTGGAAGATACATATGAATATAAGTATGAGTATGATGTCAATTATCCTCTCTCTCACTTTTTCTGCTTCACTTGA 741 0.4049 MGVEDQKQRAKDERLCEKVKMKNKRKFVGVRQRASGKWAAEIKDTSKKIRMWLGTYQTAEEAARAYDEAACLLRGSNTRTNFSTQSSTTISTNSPISLKLTNLLHRKAMSNQTQLQNHPSAITPTFQGATAPNNIMVMEQTSASSGQAQSLFVVQNQVSNNLYGLDMNMIDCAMGITQNASQLHFSWPLAQQRINELPLSKDGFNLEGQLSDSVYATNEYHHLEDTYEYKYEYDVNYPLSHFFCFT* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2443 246 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 176 - -
Pvu2g2443 246 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Pvu2g2443 246 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
Pvu2g2443 246 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Pvu2g2443 246 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Pvu2g2443 246 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Pvu2g2443 246 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Pvu2g2443 246 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Pvu2g2443 246 CDD AP2 26 82 IPR001471 GO:0003700|GO:0006355
Pvu2g2443 246 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 13 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2443 Pvu-Chr2 40301361 40302101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2443 6 220 AP2-EREBP Transcription Factor Family AT5G19790 41.860 6.74e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu2g2443 AP2 3.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2443 K09286 - gmx:100809046 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2443 2 40301361 40302101 Pvu2g2443 2 40301361 40302101 ECH