LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu2g2419	ATGCGAACTTCATGGGCTGATTTGTCTGCAAATTCTGCAGCTGACAATTCGGGTCTCGGTTTTTCTTCTAACAATGTGGGAACTGGTAGCACTTTAGCTCCTTCACGACCAGTTTATGTTCCTCCTCATCTCCGGAACCGTCAGCCATCAGCTGAAGCCCCAGCACCAGCATACAATGGTCCTTCTTCTGGTTCTTCTGGCTCTGGTGCTGCTGGTAATTCTGGATCCCGTTGGCCTGCACCCAGAAACGATAATCGTTCTGGGTATGGTGGTGGTGGTGGACGCCCAGGTGGATGGGGAAATAAAAGTGGTGGATGGGATCGTGGCAGGGAAGCCAATCCCTTTGAAGAAGAGGATAATGCTGAAGAGGCATTTAGTGAGCAAGAGAATACAGGAATAAATTTTGATGCATATGAGGACATTCCAGTGGAGACCAGTGGTGAAAATGTGCCCCCACCTGTGAATACATTTGCAGAGATCGACTTGGGTGATGCACTTAATGAGAATATAAGAAGGTGCAAATATGTGAAGCCAACACCTGTTCAGCGGCATGCCATACCAATATCCCTAGGTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAGACAGCTGCTTTCTGTTTCCCGATCATCAGTGGAATTATGAGGGGCCAACCTGTCCAGAGGCCACCTCGTGGGGTGCGTACTGTGTATCCCCTTGCGCTTGTTCTCTCTCCAACGAGGGAGCTATCAATGCAAATACATGAAGAGGCTAGGAAGTTTTCATACCAAACTGGTGTTAGGGTGGTTGTTGCTTATGGTGGAGCACCAATAAACCAGCAGCTGCGAGATCTTGAAAGAGGGGTGGACATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTTGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATCTGGCCTTGGATGAGGCAGATCGGATGCTAGACATGGGTTTTGAGCCACAAATAAGGAAAATTGTAGAACAAATGGATATGCCTCCACCAGGTGCTAGACAGACTATGTTGTTCAGTGCAACATTTCCAAAAGAGATACAGAGACTGGCTTCTGATTTTCTTTCAAAATATATTTTCCTGGCTGTTGGAAGAGTGGGTTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGACCTTCTTCATGCACAGAGGGCAAATGGTGTACAGGGAAAGCAAGCTTTGACTTTAGTTTTTGTTGAGACAAAGAAGGGAGCTGATTCACTGGAACACTGGTTGTGTCTTAATGGTTTTCCCGCAACTACTATTCACGGTGACAGGTCGCAGCAGGAAAGAGAATTAGCATTGAGGTCCTTTAAAAGTGGCAACACCCCCATATTGGTTGCTACAGATGTTGCTGCACGTGGTCTTGATATCCCCCATGTTGCTCATGTAGTCAACTTTGACCTGCCAAATGATATTGATGATTATGTACACCGAATTGGAAGAACAGGGCGAGCTGGAAAGAAAGGCCTTGCAACTGCATTCTTTAATGATAACAATTCATCACTAGCTAGAGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTGCCTGCTTGGCTCTCACGGTATGCTGCTCGGTCTTTTGGTGGAGGGAGAAACCGCCGATCAGGTGGTCGGTTTGGTAGTCGTGACTTTCGGAGAGAGGGCTCGTTTACAAGAGGTTCTTCAGATTACTACAGTGCAGGAAACAGCAGTGGTGGATATGGAGGTGGCTCTGGTGGGTATGCTGGAGGAGGGTATGGTGGTCCTGGCGTCACTAGTGCCTGGGACTGA	1848	0.4708	MRTSWADLSANSAADNSGLGFSSNNVGTGSTLAPSRPVYVPPHLRNRQPSAEAPAPAYNGPSSGSSGSGAAGNSGSRWPAPRNDNRSGYGGGGGRPGGWGNKSGGWDRGREANPFEEEDNAEEAFSEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGDALNENIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSKYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALADLMQEANQEVPAWLSRYAARSFGGGRNRRSGGRFGSRDFRREGSFTRGSSDYYSAGNSSGGYGGGSGGYAGGGYGGPGVTSAWD*	616

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu2g2419	615	MobiDBLite	consensus disorder prediction	1	131	-	-
	Pvu2g2419	615	SMART	helicmild6	429	510	IPR001650	-
	Pvu2g2419	615	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	382	549	IPR001650	-
	Pvu2g2419	615	CDD	SF2_C_DEAD	383	519	-	-
	Pvu2g2419	615	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	186	371	IPR014001	-
	Pvu2g2419	615	Gene3D	-	110	373	IPR027417	-
	Pvu2g2419	615	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	155	183	IPR014014	GO:0003724
	Pvu2g2419	615	Pfam	Helicase conserved C-terminal domain	395	510	IPR001650	-
	Pvu2g2419	615	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED	52	580	-	-
	Pvu2g2419	615	Pfam	DEAD/DEAH box helicase	179	360	IPR011545	GO:0003676\|GO:0005524
	Pvu2g2419	615	Gene3D	-	374	552	IPR027417	-
	Pvu2g2419	615	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	52	580	-	-
	Pvu2g2419	615	MobiDBLite	consensus disorder prediction	1	32	-	-
	Pvu2g2419	615	SMART	ultradead3	174	386	IPR014001	-
	Pvu2g2419	615	CDD	DEADc_DDX3_DDX4	156	377	IPR044763	GO:0003724\|GO:0005524
	Pvu2g2419	615	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	236	527	IPR027417	-
	Pvu2g2419	615	MobiDBLite	consensus disorder prediction	59	81	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu2g2419	Pvu-Chr2	40090137	40100744	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu2g2419	153	542	Eukaryotic Initiation Factors Gene Family	AT3G19760	31.969	1.60e-61	208

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu2g2419	K11594		-	gmx:100795756	1002.66