Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2411 ATGCAAAGTCAACAAACAGAGAAAGAAGAAGAGGATGAAGGCCCACCACCCGGGTGGCAACCAATTTCCACTCATCCGCCGCCACCGCCGCAACTGCAACCGCAACCGCCGCCGCCGCAACGTCCATGTGGTTGGGTTCAGATGGTTTGCGGTTCTTGTCATCGCCTGCTTTCATATCCACGAGGTGCCAAACATGTTAAATGTTCATGCTGTGAGACTGTCAACATTGTATTAGAAGCTGATCAGGTTGGGCAAGTTGAGTGTGGCAGTTGTGCAGTATTGCTAATGTACCCATATGGTGCTTCACAAGTTAGATGTTCCTCATGCCAGTTTGTGACAGAAATTGGGGCACACAACAAGCGGCCTCCATGGTCTGTACAACAAAGGAAACCAATTCCTGCAAAATCTGGATGTTAG 417 0.494 MQSQQTEKEEEDEGPPPGWQPISTHPPPPPQLQPQPPPPQRPCGWVQMVCGSCHRLLSYPRGAKHVKCSCCETVNIVLEADQVGQVECGSCAVLLMYPYGASQVRCSSCQFVTEIGAHNKRPPWSVQQRKPIPAKSGC* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2411 138 MobiDBLite consensus disorder prediction 1 40 - -
Pvu2g2411 138 MobiDBLite consensus disorder prediction 1 15 - -
Pvu2g2411 138 Pfam LSD1 zinc finger 88 112 IPR005735 -
Pvu2g2411 138 Pfam LSD1 zinc finger 50 74 IPR005735 -
Pvu2g2411 138 PANTHER PROTEIN LSD1 2 131 IPR040319 -
Pvu2g2411 138 MobiDBLite consensus disorder prediction 19 40 - -
Pvu2g2411 138 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 85 113 IPR005735 -
Pvu2g2411 138 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 47 77 IPR005735 -
Pvu2g2411 138 PANTHER PROTEIN LOL2 2 131 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pvu2g2411 zf-LSD1 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2411 - - gmx:100780865 225.328