Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2406 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCCCAGGAAGGGGAAAGGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGAAGCCGCGTGGTATACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTCTCGACGAACAAGGAAATAGATGCTCATATCCCAAACTACCCAAGCTTACCTCCTCAACTCATATGTCAACTTCATAACATGACCATGCATGCTGATGCAGAGACTGATGAAGTGTATGCACAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCATACCTTCCAGCGGAGTTGGGCACTCCTAGTAAACAGCCAACGAACTATTTCTGCAAAACTTTGACTGCAAGTGACACAAGCACTCATGGGGGATTCTCTGTACCTCGTCGTGCAGCTGAAAAAGTGTTCCCTGCATTGGATTTCTCTCAGCAGCCTCCTGCTCAAGAATTAATTGCAAGGGATTTGCACGGTAATGAGTGGAAATTCAGACATATCTTCCGGGGCCAGCCCAAAAGGCATCTACTTACAACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAACTTCTTCTTGGCATCCGTCGTGCTAATCGGCCACAAACTGTGATGCCTTCTTCAGTGTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTATAACCCACGTGCCAGCCCATCAGAATTTGTCATTCCCTTAGCGAAGTACGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGGTTTAGGATGCTGTTTGAAACTGAGGAATCAGGTGTACGACGATACATGGGTACAATAACTGGCATTAGTGACCTGGATCCTACCCGATGGCCAAACTCACACTGGCGCTCAGTTAAGGTTGGTTGGGATGAATCTACTGCTGGAGAGAGACAACCTAGAGTGTCTTTATGGGAAATTGAGCCATTAACTACATTTCCTATGTATCCATCTCCATTCCCCCTTAGGCTTAAACGACCATGGCCGCCAGGACTGCCTTCATTCCACGGCATGAAGGATGATGATTTTGGCCTGAATTCATCTCTCTTGTGGCTCCGAGACAGTGATAGAGGGCTGCAGTCTCCTACTTTTCAGGGGATTGGTGTTAATCCCTGGATGCAGCCTAGATTTGATCCCTCCATGTTGAATATGCAAACAGATATGTATCAAGCTGCTGCTGCTGCTGCTGCTGTTCAGGAGATGAGGGGTTTGGATCCTTCCAAACAGCATTCTGCTTCCATACTTCAATTTCAGCAACCGCAGAACTTCCCAAACAGGACAGCGGCCTTTGTGCAGGCCCAGATGTTGCAGCAGACACAACATCAGCAGATTTTTGGAAATAATCAAGAGAATCCGCATTCACCACAATCTCATCTGCAAACTCAGGCTCATCTTCAGCAACAATTACAACATCAGCACTCATTCAATAGTCAGAATCATCATCAGCACCAGCAACAACAACTACGACAGACACAGCAGCAACAGCAACAGCAACAAGTTGTAGATAATCAGCAAATTTCTAGTGCAGTTTCTTCAATGTCTCAGTTTGTTTCAGCTCCTCCACCTCAATCACCTCCTATGCAAGCTATCTCTTCCTTGTGCCAACAGCAAAATTTTTCTGATGGGAACTCTGTGCCTACTATTGTTTCTCCCCTGCACAGTATCCTGGGTTCATTTCCGCAGGATGAAACATCTCACCTCCTGAACCTTCCTAGAACAAGCTCTTGGATTCCGGTTCAAAATTCATCTGGGTGGCCCTCAAAGCGTGTTGCAGTGGATCCTCTTATTTCTTCCGGAGTCTCCCAATGTGTTCTACCTCCGGTGGAGCAGCTAGGGCAGCCCCAGAGTACCGTGTCTCAAAATGCTATTACTTTACCACCTTTTCCTGGTAGGGAATGCTCCATAGACCAAGAAGGGAGCAATGATCCACAAAACCATCTCCTATTTGGTGTTAATATAGATCCCTCATCCCTTCTCATGCCTAATGGAATGTCAAACCTTAAGGGGGTTAGCAGCAACAATGACTCCTCAACCTTGCCATATCAATCTTCTAATTATCTGAATACCACCACAGGCACTGATTCTTCATTGAACCATGGAATAACACCCAGTATTGGCGGTGAATCAGGTTACCTGCAGAGTCCAGAAAATGCTGGACAAGGAAACCCACTGAACAAAACCTTTGTGAAGGTTTATAAGTCAGGGTCCTTTGGAAGGTCATTGGATATCACTAAGTTCAGCAGCTACCATGAGCTGCGAAGTGAACTTGCTCAAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAACGATGTTCTTCTCCTTGGTGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATAAAGATACTTTCTCCTCAGGAAGTGCAGCAAATGGGGAACCCTGGTCTTGAACTCTTGAACTCGGTTCCAATTCAAAGGCTCTCTAATGGCATCTGTGATGACTATGTGAGCCGTCAAGACCCAAGAAATATAAGCCCTGGAATAACAGCTGTCGGGTCTTTAGACTACTGA 2727 0.4624 MRLSSAGFSPPPQEGERRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEIDAHIPNYPSLPPQLICQLHNMTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPALDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESGVRRYMGTITGISDLDPTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGLNSSLLWLRDSDRGLQSPTFQGIGVNPWMQPRFDPSMLNMQTDMYQAAAAAAAVQEMRGLDPSKQHSASILQFQQPQNFPNRTAAFVQAQMLQQTQHQQIFGNNQENPHSPQSHLQTQAHLQQQLQHQHSFNSQNHHQHQQQQLRQTQQQQQQQQVVDNQQISSAVSSMSQFVSAPPPQSPPMQAISSLCQQQNFSDGNSVPTIVSPLHSILGSFPQDETSHLLNLPRTSSWIPVQNSSGWPSKRVAVDPLISSGVSQCVLPPVEQLGQPQSTVSQNAITLPPFPGRECSIDQEGSNDPQNHLLFGVNIDPSSLLMPNGMSNLKGVSSNNDSSTLPYQSSNYLNTTTGTDSSLNHGITPSIGGESGYLQSPENAGQGNPLNKTFVKVYKSGSFGRSLDITKFSSYHELRSELAQMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNPGLELLNSVPIQRLSNGICDDYVSRQDPRNISPGITAVGSLDY* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2406 908 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Pvu2g2406 908 Gene3D - 772 864 - -
Pvu2g2406 908 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Pvu2g2406 908 Gene3D - 125 228 IPR015300 -
Pvu2g2406 908 MobiDBLite consensus disorder prediction 495 554 - -
Pvu2g2406 908 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 888 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu2g2406 908 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu2g2406 908 Gene3D - 291 363 - -
Pvu2g2406 908 SUPERFAMILY CAD & PB1 domains 774 850 - -
Pvu2g2406 908 MobiDBLite consensus disorder prediction 739 768 - -
Pvu2g2406 908 SMART B3_2 127 229 IPR003340 GO:0003677
Pvu2g2406 908 ProSiteProfiles PB1 domain profile. 775 859 IPR000270 GO:0005515
Pvu2g2406 908 CDD B3_DNA 126 227 IPR003340 GO:0003677
Pvu2g2406 908 Pfam AUX/IAA family 768 860 IPR033389 -
Pvu2g2406 908 PANTHER AUXIN RESPONSE FACTOR 1 888 - -
Pvu2g2406 908 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2406 Pvu-Chr2 39951995 39958875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2406 1 484 B3 DNA Binding Superfamily AT1G30330 85.481 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu2g2406 AUX_IAA 2.4e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2406 - - gmx:100798719 1581.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2406 2 39951995 39958875 Pvu2g2406 2 39951995 39958875 ECH