Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2400 ATGTCACACAACACCGAAGTGCCAACTTCTTCTATGTCTACTCAACATCATGAAAAAGAAGAAAAAGCCAACCAGAAGGTTCCCTTCTACAAGCTCTTCACTTTTGCAGATCCTCTTGACGTCGCCTTGATGACCATTGGCACGATCTGTGCCATGGCTAATGGCTGGTCGCAGCCTATCATGACTCTCATTCTAGGAAAGCTTATCAACACCTTTGGCTCCACTGATCCATCAAATACCATCAAAGAAGTTTCTAAGGTTTCATTATTATTTGTATACCTGGCTATTGCGATTGGAGTTGTCTCGTTTCTTCAGGTAGCATGTTGGATGGTGACAGGGGAAAGACAAGCCCCCAGGATTCGCAGTTTGTACTTGAAAACTATACTGAAGCAGGACATTGCTTTCTTTGACACTGAGACAACAACTGGTGAGGTAATAGGAAGAATGTCTGGTGACACCATTCTCATTCAAGATTCCATGGGAGAAAAGGTTGGGAAGTTTATACAACTTGCTTCAACTTTTATTGGTGGCTTTGTGATTGCCTTTGTAAGAGGATGGCAACTTGCTGTTATTTTGCTCTCATGTATACCATGTGTTGTTGTTACTGGTGGAATTCTATCCATGTTGATGACTAAAATGTCAAGTCGGGGGCAAGCTGCTTATTCAGAAGCAGGAACTGTGGCTGAACAAACAGTGGGATCTATCAGAACAGTTGCTTATAAAACTATGGTTCTACAAGGGATGGCCTCGGGGTTTGGACTGGGAGTACTTATGTTGATTATCTTCTGCACCTATGCACTTGCCATGTGGTATGGTTCTAAACTGGTTATTGAGAAAGGATACAACGGTGGAACCGTCATCACTGTAATAGTAGCTCTTATGACTGGTGGAATTTCACTTGGTCAAACATCTCCTTGCCTAAATGCATTTGCCGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCAAAAATTGATGCTTATGACACCAGCGGTGTTGTCATGGAAGACATAAGGGGAGATATTGAACTCAGGGATGTTTACTTTAGCTACCCTGCAAGGAAAAATGTGCAGATCTTCTCTGGATTCTCATTATATGTCCCCAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGTGGAAGTGGAAAGTCTACCGTGATAAGTTTATTGGAACGATTCTATGATCCTGATGCTGGAGAAGTACTCATAGATGGTATCAATTTGAAGAATTTTCAGGTTAGATGGATAAGAGAACAAATTGGATTAGTTAGTCAAGAACCTATCCTGTTTGCAGCAAGTATCAAAGAGAACATAATCTATGGAAAAGAAGGTGCAACTGATGAGGAAATAAAATCAGCAATAACACTTGCCAATGCCAAAACGTTCATTGACAAGCTGCCTCAGGGCCTTGAGACAATGGCAGGACAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTAAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACTAGTGCATTAGATGCCGAGTCTGAACGTGTTGTTCAAGAAGCATTAGAACAAGCAATGTCAAAAAGGACTACTGTAGTTGTTGCACATCGCTTGACAACAATTAGAAATGCTGACACCATAGCGGTGGTTCATCAAGGAAAAATTGTGGAGGAAGGAACTCATGATGAGTTAATCAAGGATGTTGATGGTGCTTATTCTCAGCTTATTCGCCTACAGGAAGGAGCTAAGGAAGCTAAGGGTAGCAATAATTCTGAAGCAGAGAAGTCAAGTAACAAGGTTAATTTAGATAGTAACATAGCCAGATCTTCCACCCAGAGAGAAGTTTCCTTAAACAGAGGTTCATCAAGTAGACACTCCCAGTCACATAGCTTTGCTCTTTCTCATCGAAGTTGGGTACATGAATCTGTAGAAGTAGAAAAATATGGGGATGTTGAAAAAAGTAAAGTTGATACTAAGAAGCCCAATAAGGTTTCTTTGAGACGTTTGGCATACTTAAACAAGCCTGAAGTTCCTGTCTTAGTTGTTGGATCCGTTGCTGCAATAATACATGGTCTTGTGTTCCCTTTGTTTGGCTTCTTGTTTTCCTCAGCAATAACTATGTTCTTTGAACCTCCAGAGAAACAGCGGAAAGATTCTAGGTTCTGGGCACTTCTATATGTGGGTTTGGGTTTAGTTACTCTTGTGGTCATACCAATTCAAAATTACTTCTTTGGCGTTGCTGGTGGAAAATTAGTAGAAAGAATTCGTTCACTCACATTTGAAAAGGTTGTCCATCAAGAAATCAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTAGTTGGTGACACATTGGCCCTCATTGTGCAAAACTTATCAACAATCATTTCTGGTCTAGTTATATCATTCACTGCTAATTGGATTCTTGCTTTCATAATTCTGGCTGTGTCACCCTTGGTCCTTATTCAAGGATTTCTTCAGATGAAGTTTCTTAAAGGATTCAGTGCAGATGCCAAGGTAAAGTATGAAGAGGCAAGTCAGGTGGCCAATGAAGCTGTTGGTAGCATCAGAACTATCGCATCATTTTGTGCCGAATCGAAGGTGATGGATATGTACCGGAAGAAATGTTTAGAGCCGGAAAAACAAGGTGTTCGGTTGGGGCTTACTAGTGCCTTGGCTCCAGACACCAACAAAGCCAAAGATTGCGCAGCTTCAATATTTAACATTCTAGACAGCACGCCTACCATTGACTCCAGCAACACTCAGGGTAGAACACTAGAAGCCATTGCTGGTGATATTGAACTTCAACATGTCTGTTTTAATTACCCAACTAGGCCTCATATTCAAATTTTCAAAGATTTGTGTCTAAGCATTCTGGCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGGAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTCATACTGGACGTATACTACTTGATGGAGTGGATATAAAAGAGTTCAGATTAAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAACCTATTCTCTTCAATGATAGCATTCGTGCCAACATAGCTTATGGCAAAGAAGGAGTTGCCACAGAGGAAGAGATAAGTGCAGCAGCTAAAGCGTCCAATGCACACCAATTCATATGTGCTCTCCCCGAAGGCTATGACACCTCTGTTGGAGAAAGAGGCACACAATTGTCAGGAGGACAAAAACAGCGGATAGCCATTGCCAGAGCCATGCTGAAAGACCCCAAAATCCTCTTGCTTGATGAAGCAACCAGTGCACTTGATGCTGAGTCAGAGAAAGTAGTTCAAGAGGCTCTAGATAGAGTGAGTGTGAATAGAACTACTGTAGTAGTAGCTCACCGTCTTACAACAATTAGAGGTGCTGACATGATAGCTGTAATGAAAAATGGAGCGGTTGCTGAAAAGGGAAGACATGATGAGTTGATGATGATTAACGATGGAGTCTATGCATCATTGGTTGCTCTACACATGAGTGCATCGTAA 3594 0.4171 MSHNTEVPTSSMSTQHHEKEEKANQKVPFYKLFTFADPLDVALMTIGTICAMANGWSQPIMTLILGKLINTFGSTDPSNTIKEVSKVSLLFVYLAIAIGVVSFLQVACWMVTGERQAPRIRSLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDSMGEKVGKFIQLASTFIGGFVIAFVRGWQLAVILLSCIPCVVVTGGILSMLMTKMSSRGQAAYSEAGTVAEQTVGSIRTVAYKTMVLQGMASGFGLGVLMLIIFCTYALAMWYGSKLVIEKGYNGGTVITVIVALMTGGISLGQTSPCLNAFAAGQAAAYKMFETIKRKPKIDAYDTSGVVMEDIRGDIELRDVYFSYPARKNVQIFSGFSLYVPSGTTAALVGQSGSGKSTVISLLERFYDPDAGEVLIDGINLKNFQVRWIREQIGLVSQEPILFAASIKENIIYGKEGATDEEIKSAITLANAKTFIDKLPQGLETMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEQAMSKRTTVVVAHRLTTIRNADTIAVVHQGKIVEEGTHDELIKDVDGAYSQLIRLQEGAKEAKGSNNSEAEKSSNKVNLDSNIARSSTQREVSLNRGSSSRHSQSHSFALSHRSWVHESVEVEKYGDVEKSKVDTKKPNKVSLRRLAYLNKPEVPVLVVGSVAAIIHGLVFPLFGFLFSSAITMFFEPPEKQRKDSRFWALLYVGLGLVTLVVIPIQNYFFGVAGGKLVERIRSLTFEKVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNLSTIISGLVISFTANWILAFIILAVSPLVLIQGFLQMKFLKGFSADAKVKYEEASQVANEAVGSIRTIASFCAESKVMDMYRKKCLEPEKQGVRLGLTSALAPDTNKAKDCAASIFNILDSTPTIDSSNTQGRTLEAIAGDIELQHVCFNYPTRPHIQIFKDLCLSILAGKTVALVGESGSGKSTVISLLERFYNPHTGRILLDGVDIKEFRLSWLRQQMGLVGQEPILFNDSIRANIAYGKEGVATEEEISAAAKASNAHQFICALPEGYDTSVGERGTQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAESEKVVQEALDRVSVNRTTVVVAHRLTTIRGADMIAVMKNGAVAEKGRHDELMMINDGVYASLVALHMSAS* 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2400 1197 SUPERFAMILY ABC transporter transmembrane region 667 913 IPR036640 GO:0005524|GO:0016021
Pvu2g2400 1197 Gene3D - 345 615 IPR027417 -
Pvu2g2400 1197 SUPERFAMILY ABC transporter transmembrane region 26 331 IPR036640 GO:0005524|GO:0016021
Pvu2g2400 1197 ProSitePatterns ABC transporters family signature. 486 500 IPR017871 GO:0005524
Pvu2g2400 1197 Gene3D ABC transporter type 1, transmembrane domain 90 912 IPR036640 GO:0005524|GO:0016021
Pvu2g2400 1197 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 954 1191 IPR003439 GO:0005524
Pvu2g2400 1197 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 21 911 IPR039421 -
Pvu2g2400 1197 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 910 1194 IPR039421 -
Pvu2g2400 1197 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 937 - -
Pvu2g2400 1197 CDD ABC_MTABC3_MDL1_MDL2 347 585 - -
Pvu2g2400 1197 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 347 583 IPR003439 GO:0005524
Pvu2g2400 1197 Pfam ABC transporter transmembrane region 44 239 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu2g2400 1197 Pfam ABC transporter transmembrane region 688 913 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu2g2400 1197 Pfam ABC transporter 973 1122 IPR003439 GO:0005524
Pvu2g2400 1197 Pfam ABC transporter 367 514 IPR003439 GO:0005524
Pvu2g2400 1197 MobiDBLite consensus disorder prediction 1 22 - -
Pvu2g2400 1197 ProSitePatterns ABC transporters family signature. 1094 1108 IPR017871 GO:0005524
Pvu2g2400 1197 CDD ABC_6TM_Pgp_ABCB1_D1_like 44 308 - -
Pvu2g2400 1197 CDD ABC_MTABC3_MDL1_MDL2 954 1190 - -
Pvu2g2400 1197 MobiDBLite consensus disorder prediction 587 635 - -
Pvu2g2400 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 585 IPR027417 -
Pvu2g2400 1197 Gene3D - 944 1196 IPR027417 -
Pvu2g2400 1197 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 46 312 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu2g2400 1197 SMART AAA_5 981 1168 IPR003593 -
Pvu2g2400 1197 SMART AAA_5 374 560 IPR003593 -
Pvu2g2400 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 945 1192 IPR027417 -
Pvu2g2400 1197 MobiDBLite consensus disorder prediction 597 635 - -
Pvu2g2400 1197 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 913 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu2g2400 1197 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 21 911 - -
Pvu2g2400 1197 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 910 1194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2400 Pvu-Chr2 39895732 39901076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2400 7 585 Calmodulin-binding Proteins AT2G36910 37.438 3.17e-116 390