Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2399 ATGGCAGCAGATGAAGATCACAGAACCAAAGTCCAGGAGAAGGTTCCATTTTACAAGCTATTCACTTTTGCAGATAGGCTTGATAGGACTTTGATGATTATTGGTCTCATTTCTGCCATGGCTAATGGGATGGCGCAACCTCTCATGACCCTCATTTTTGGGAAGATGATCAATGCCTTTGGATCCACTGATCCTTCCCTCATAGTTAAGGAAGTTTCCAAGGTTGTATTATTATTTGTTTACCTGGCTTTTGGTGCTGGAATAGCCTCTTTTCTACAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCCGCAAGGATCCGTGGCATGTACTTGAAAACTATATTGAAGCAGGACATTGCCTTTTTTGACACTGAAACAACAAGTGGTGAGGTAATTGGAAGAATGTCCGGTGACACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATTCAACTTGTTACATCATTTTTTGGTGCCTTTATAATTGCCTTCACAAAAGGATGGCAACTCTGTCTCGTTTTGCTTGCATGTATTCCTTGTATTGTGGTTGTTGGAGGAATTATGTCCATGATGATGGCGAAAATGTCAAATCGCGGGCAAGTCGCTTATGCAGAAGCTGGAAATGTTGTAGAGCAAACAGTTGGAGCCATTAGAACTGTTGCCTCTTTTACTGGTGAGAGAAAAGCAATAGAAAAGTACAATAACAAGTTAAGAGTAGCTTATATTAAAACTGTTCAACAAGGGCTGGCTTCAGGATTTGGAATGGGAATACTTTTGTTGATTATATTTTGCACCTATGCACTTGCCATGTGGTATGGCTCTAAACTCATTATGGAGAAAGGCTATGATGGTGGAAGTGTTTTCAACATTATCATATCAATCAATACTGGTGGAATGGCACTTGGTCAGGCAACTCCATGCGTGAATTCATTTGCAGCGGGTCAAGCAGCAGCATATAAGATGCTTGAGACAATTAAACGAAAGCCGAAAATAGATGCTTATGACACCAATGGGGTTGTCTTGGAAGACATGAAGGGAGATATTGAACTCAAGGATGTTTACTTCAGATACCCTGCAAGGCCAGATGTTCAGATATTTTCTGGATTCTCATTCTATATTCCAAGTGGCACAACTGCTGCTTTAGTGGGACAAAGTGGAAGTGGGAAGTCAACTATAATCAGTTTATTAGAAAGATTTTATGATCCTGAAGCTGGAGAAGTTCTTATAGATGGTGTGAATTTGAAGAATTTTCAAGTTAGATGGATTAGAGAACAGATTGGACTTGTTGGTCAAGAACCTGTCCTTTTTACAGCTACTATTAAAGAAAACATAGCATACGGGAAAGAAGGTGCAACAGATGAGGAGATAAATACAGCAATAACACTTGCCAATGCAAAAATATTCATTGATAAGCTGCCTCAGGGCATTGACACGATGGTAGGAGGGCATGGAACTCAACTTTCCGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCGATTTTGAAGAACCCAAGAATCATTCTTCTTGATGAAGCTACTAGTGCATTGGATGTTGAGTCTGAACGTATTGTTCAAGTAGCACTAGAAAAAGTTATGACACAAAGGACTACTGTAATTGTTGCACATCGTTTGACAACTATTAGACATGCTGACATCATAGCAGTGGTACACCAGGGCAAAATTGTGGAGAAAGGAACTCATGATGAGTTAATCAAGGATGCTGATGGCGCTTATTCTCAGCTTGTTCGTTTACAAGAAGGAAATAAAGGAGCAGAAGAAGGGAGTCGTAAGTCAGAAGCAGATAAGTCAAATAACAATAGTTTCAGCTTATCTCGGAGAACATCCTTTGCAAGATCAAGCAGTAAGCACTCTCTCTCATTTGGTTTTGCACTTCCTTATCAAATTTCCTTGCACGAGTCTGGAGAGGGAGATAGCGAGAATGTTGAAAGTAGTGAAGTTGGTAATAAGAAGCATCAAAAGGTTGCTGTTAGCCGTTTGGTCAAGTTGAACAAGCCAGAGGTTCCTGTCTTATTACTAGGATCCATTGCAGCAGCAATACATGGCCTTACTCTTCCTGTATTTGGACTCTTGCTTTCATCAGCTGTTAACACGTTCTTTAAACCTCCTGAACAACTTAGGAAAGATTCTGTATTTTGGTCACTTCTATTTGTTGGTTTGGGGATTGTCGCTCTGGTGGCTATACCATTGCAAAACTACTTATTTGGGATAGCTGGTGGGAAACTTATAGAACGAATTCGTTCAATGACATTTAATAAGGTTGTGCACCAAGAAATCAGTTGGTTTGATCGTCCTTCAAATTCAAGTGGTGCAGTTAGTGCAAGGCTAGCTACTGATGCTTCTGCAGTGAGAAGTCTTGTTGGTGACACCTTGGCCCTCATTGTGCAAAACATAGCAACAATCACAGCAGGTCTAGTTATAGCATTCACTGCTAATTGGATTTTGGCTTTTGTAATTCTGGCTGTGTCACCCTTGTTGCTTCTACAAGGATACCTTCAGACCAAGTTCGTAAAAGGATTTAGTGCAGATGCAAAGGTGAAGTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTTGGTAGCATTAGAACTGTTGCATCATTCTGTGCTGAGCCAAAGGTGATGGATATGTACACGAAGAAATGTTCAGGGCCTGAAAAACAAGGTGTTCGCTTGGGGCTTGTTAGTGGTGCAGGACTAGGTTTCTCTTTTCTTGCTCTATACTGCACAAATGCTTTCTGTTTCTACATAGGATCTATTCTTGTGCAACACGGGAAAGCAACTTTTGGAGACGTTTTCAAGGTTTTCTTTGCCTTAACAGTTACGGCAGTTGGTGTTTCCCAGAGTAGTGCCTTGGCTCCAGATACAAACAAAGCCAAAGATTCTGCCACTTCAATATTTGAAATTCTTGATACAAAACCAGCGATTGACTCCAGCAGTGATGAGGGCACAACACTAGACACCATAAAAGGTGACATTGAACTACAACAAGTCAGCTTTTGTTACCCAACAAGGCCTGATATTCAAATTTTCAAGGATTTGTGTCTACGCATGCCAGCTGGAAAGACCGTTGCCTTGGTTGGAGAAAGTGGGAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTGATTCTGGACGCCTACTACTTGATGGTGTGGATATGAAAACCTTCAGACTAAGTTGGCTGAGGCAACAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTCGTGCCAACATAGCTTATAGCAGAGAGGGAGGTGCCACAGAGGAAGAGATAGTTGCAGCAGCAGAAGCAGCAAATGCACACAAGTTCATAAGCTCTCTTCCACATGGTTATGACACCCCTGTGGGAGAAAGAGGGACACAATTGTCAGGAGGACAAAAGCAGCGCATAGCCATTGCAAGAGCCATTCTGAAAGACCCCAAAATCCTTTTGCTGGATGAGGCAACGAGTGCACTTGATGCAGAATCAGAGCGTGTGGTTCAAGAGGCTCTAGATAAAGTAAGTGTTAATAGAACTACTGTTGTGGTAGCTCACCGTCTTACAACAATTAAAGGTGCTGACATCATAGCAGTAGTAAAAAATGGAGTGATTGCTGAGAAAGGAGGACATGAGGCTTTGATGAAGATTGAAGATGGAGTTTATGCTTCATTGGTATCTCTCCATATTAGTGCATCATAA 3750 0.4149 MAADEDHRTKVQEKVPFYKLFTFADRLDRTLMIIGLISAMANGMAQPLMTLIFGKMINAFGSTDPSLIVKEVSKVVLLFVYLAFGAGIASFLQVSCWMVTGERQAARIRGMYLKTILKQDIAFFDTETTSGEVIGRMSGDTILIQDAMGEKVGKFIQLVTSFFGAFIIAFTKGWQLCLVLLACIPCIVVVGGIMSMMMAKMSNRGQVAYAEAGNVVEQTVGAIRTVASFTGERKAIEKYNNKLRVAYIKTVQQGLASGFGMGILLLIIFCTYALAMWYGSKLIMEKGYDGGSVFNIIISINTGGMALGQATPCVNSFAAGQAAAYKMLETIKRKPKIDAYDTNGVVLEDMKGDIELKDVYFRYPARPDVQIFSGFSFYIPSGTTAALVGQSGSGKSTIISLLERFYDPEAGEVLIDGVNLKNFQVRWIREQIGLVGQEPVLFTATIKENIAYGKEGATDEEINTAITLANAKIFIDKLPQGIDTMVGGHGTQLSGGQKQRIAIARAILKNPRIILLDEATSALDVESERIVQVALEKVMTQRTTVIVAHRLTTIRHADIIAVVHQGKIVEKGTHDELIKDADGAYSQLVRLQEGNKGAEEGSRKSEADKSNNNSFSLSRRTSFARSSSKHSLSFGFALPYQISLHESGEGDSENVESSEVGNKKHQKVAVSRLVKLNKPEVPVLLLGSIAAAIHGLTLPVFGLLLSSAVNTFFKPPEQLRKDSVFWSLLFVGLGIVALVAIPLQNYLFGIAGGKLIERIRSMTFNKVVHQEISWFDRPSNSSGAVSARLATDASAVRSLVGDTLALIVQNIATITAGLVIAFTANWILAFVILAVSPLLLLQGYLQTKFVKGFSADAKVKYEEASQVANDAVGSIRTVASFCAEPKVMDMYTKKCSGPEKQGVRLGLVSGAGLGFSFLALYCTNAFCFYIGSILVQHGKATFGDVFKVFFALTVTAVGVSQSSALAPDTNKAKDSATSIFEILDTKPAIDSSSDEGTTLDTIKGDIELQQVSFCYPTRPDIQIFKDLCLRMPAGKTVALVGESGSGKSTVISLLERFYNPDSGRLLLDGVDMKTFRLSWLRQQMGLVGQEPILFNESIRANIAYSREGGATEEEIVAAAEAANAHKFISSLPHGYDTPVGERGTQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQEALDKVSVNRTTVVVAHRLTTIKGADIIAVVKNGVIAEKGGHEALMKIEDGVYASLVSLHISAS* 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2399 1249 MobiDBLite consensus disorder prediction 593 620 - -
Pvu2g2399 1249 CDD ABC_6TM_Pgp_ABCB1_D1_like 32 327 - -
Pvu2g2399 1249 Gene3D - 352 606 IPR027417 -
Pvu2g2399 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 33 319 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu2g2399 1249 Gene3D - 996 1248 IPR027417 -
Pvu2g2399 1249 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 989 - -
Pvu2g2399 1249 CDD ABC_MTABC3_MDL1_MDL2 354 592 - -
Pvu2g2399 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 592 IPR027417 -
Pvu2g2399 1249 ProSitePatterns ABC transporters family signature. 1146 1160 IPR017871 GO:0005524
Pvu2g2399 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 996 1244 IPR027417 -
Pvu2g2399 1249 Pfam ABC transporter transmembrane region 32 303 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu2g2399 1249 Pfam ABC transporter transmembrane region 685 956 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu2g2399 1249 Gene3D ABC transporter type 1, transmembrane domain 77 980 IPR036640 GO:0005524|GO:0016021
Pvu2g2399 1249 SMART AAA_5 1033 1226 IPR003593 -
Pvu2g2399 1249 SMART AAA_5 381 573 IPR003593 -
Pvu2g2399 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1243 IPR003439 GO:0005524
Pvu2g2399 1249 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 1246 IPR039421 -
Pvu2g2399 1249 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 1246 - -
Pvu2g2399 1249 ProSitePatterns ABC transporters family signature. 493 507 IPR017871 GO:0005524
Pvu2g2399 1249 Pfam ABC transporter 374 521 IPR003439 GO:0005524
Pvu2g2399 1249 Pfam ABC transporter 1025 1174 IPR003439 GO:0005524
Pvu2g2399 1249 SUPERFAMILY ABC transporter transmembrane region 667 990 IPR036640 GO:0005524|GO:0016021
Pvu2g2399 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 685 971 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu2g2399 1249 CDD ABC_MTABC3_MDL1_MDL2 1006 1242 - -
Pvu2g2399 1249 SUPERFAMILY ABC transporter transmembrane region 19 338 IPR036640 GO:0005524|GO:0016021
Pvu2g2399 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 354 590 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2399 Pvu-Chr2 39888366 39893992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2399 686 1248 Calmodulin-binding Proteins AT2G36910 42.707 3.23e-136 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2399 K05658 - gmx:100792531 2144.78