Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2396 GTTTCCCATTCAAATAAATTGAGCATTCACTTCACTCTCACTTCCAACACTCACCACAGCACTCTGTGTCGGAGAGGTAAGGCAAGAATGACCCAACCACTTCCCATCGTTGCTTGCGTTCTGTTATCGGCAGTAGCGTGGGTGGCGTGTTTGAACCAAGAGGGGCTGTACCTGTACCAACTCAAGCTCTCTCTCGACGACCCTTACTCCACTCTTTCCTCCTGGAACTCCAGGGACGCCACCCCTTGCAACTGGTACGGGGTAACCTGCGCCGGCGATGCCTCCAACACCACCGTAACTGAATTGGACCTTTCCAACACCAACATCGGAGGCCCTTTCCTCGCCAACGTCCTCTGCCGTCTCCCCAACCTCCTCTCCATAAACCTCTTCAACAACTCCATCAACCAAACCCTCCCTCTCGACATCTCCCTCTGCCTCTCTCTCCGCCACCTCGACCTCTCCCAGAACCTCCTCACCGGTCCCCTCCCCGCCACGCTCCCGCTCCTCCCCAACCTCCGCTACCTCGACCTCACCGGCAACAACTTCTCCGGCCCCATCCCGGACTCCTTCGGAACTTTCCAGAACCTCCAAGTCCTCTCCCTCGTCTCCAATCTTCTAGAAGGCACCATCCCCCCCTCGTTGGGCAACGTCTCCTCTTTGAAAATGCTCAACCTCTCTTACAACCCCTTCTTCCCCGGTCGAATCCCTCCGGAGCTCGGCAACCTCACGAACCTCGAGGTTCTCTGGCTCACGCAATGCAACCTCGTCGGCGTCATTCCAGCCTCCCTCGGGAACCTCAACAAGCTCCAGGACCTCGACCTCGCGCTCAATGACCTCTACGGCTCCATCCCGAGTTCTCTCACTCAGTTAACCAGCCTTACGCAGATCGAGTTGTACAACAACTCGCTCTCCGGTGAGTTGCCTCGGGGAATGGGGAATCTCACCCGCTTGAGGCTCCTCGACGCCTCCATGAACCACTTAACCGGGAGGATTCCCGACGAGCTTTGTTCTTTGCCGTTGGAGAGTCTCAATTTGTACGAAAACCGTTTCGAGGGAGAGTTACCGGCCAGCATTGCGGATTCCGAGAATCTATATGAGCTTCGGCTCTTTGGGAACCGCCTCACCGGCAGGTTACCCGCGAATCTCGGCAAGAATTCGCAGCTCCGGTGGCTGGACGTATCGAGCAACCAGTTCTGGGGGCCTATTCCGGCGACGCTCTGTGATAAGGGTGCACTTGAGGAGCTTCTGGTGATTTATAATCTTTTCTCCGGGGAGATTCCAGCGAGCTTAGGCACGTGCCAGAGCTTGACACGTGTGAGGCTCGGATTCAACCGGTTGTCCGGCGAGGTTCCCGCCGGGATCTGGGGGCTTCCGCGCGTCTATCTTCTCGAGCTTGTCGACAACTCGTTTTCGGGTTCCATAGCCAGGACCATTGCTGGTGCCGGGAACTTGTCGCTGTTGATTCTGTCGAAGAATAACTTCTCGGGAACGATTCCCGATGAGGTTGGGTGGTTGGAGAATCTCGTGGAGTTTTCCGCCAGTGATAATAAGTTCAGAGGCTCGCTTCCGGATAGCATTGTGAATCTTGGGCAGCTTGGGATTCTCGATTTTCATAATAACAGACTCTCTGGGGAGTTGCCGAAAGGGATTCGTTCGTGGAAGAAGCTCAACGATTTGAATTTGGCCAACAATGAGATTGGTGGGAAGATTCCTGATGAGATTGGGGGTTTGTCCGTGCTGAACTTTCTAGATCTTTCTAGTAACCGCTTTTCGGGGAAAGTCCCTCACGGGTTGCAGAATCTTAAGCTGAATCAGCTTAATTTGTCTTATAATCGTTTGACTGGTGAACTTCCTCCTCTGTTGGCTAAGGTTATGTATAGGTCTAGTTTCCTCGGTAATCCTGGCTTGTGTGGGGATTTGAAGGGGTTGTGTGATGGTAGGGGCGAGGCAAAGAGTGTAGGTTATGTTTGGCTGCTTCGAGCTATTTTTGTGGTAGCCACTTTGGTTTTCCTTGTTGGTGTGGTTTGGTTTTACTTTAGGTATAAGAATTTCCAGGACGCCAAGAGGGCGATTGATAAGTCGAAGTGGACGTTAATGTCGTTTCATAAACTGGGTTTTAGTGAAGATGAGATTTTGAATTGTCTTGATGAGGATAATGTGATTGGAAGTGGTTCCTCGGGGAAGGTTTACAAGGTTGTGCTTAGCAGTGGGGAGGTTGTTGCTGTGAAGAAGATATGGGGAGGGGTTAGGAAGGAGGTAGAGAGTGGGGATGTTGAAAAGGGTAGGGTTCAGGACAATGCTTTTGACGCGGAGGTTGAGACTTTGGGCAAGATCAGGCACAAGAACATAGTCAAGCTGTGGTGTTGCTGCACCACCAGGGATTGCAAGCTCTTGGTTTATGAATATATGCCTAATGGAAGTCTTGGTGATTTGCTGCATAGTAGTAAAGGAGGGTTGTTGGATTGGCCAACAAGGTGTAAGATAGCTGTGGATTCGGCAGAAGGACTCTCTTATCTGCATCATGACTGTGTTCCCGCAATTGTTCATAGAGATGTGAAATCAAACAACATTTTATTGGATGGGGACTATGGTGCGAGGGTGGCTGATTTTGGAGTAGCTAAGGCGGTTGAAACGACAGCAAAAGGAACTAAATCCATGTCCGTCATAGCTGGCTCTTGTGGCTATATTGCACCAGAATATGCTTACACGCTCAGAGTGAATGAGAAGAGCGACATATACAGCTTTGGGGTTGTCATACTCGAGTTGGTTACTGGAAGACGCCCGGTGGACCCTGAATTTGGGGAGAAAGACTTGGTTAAGTGGGTGTGCACTACCTTGGACCAGAAAGGCGTGGACCATTTAATTGACTCAAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCTTCAACATTGGACTCATGTGCACTAGTCCTCTTCCTGTTAACAGGCCTTCAATGAGAAGAGTAGTGAAAATGTTGCAAGAGGTGGGCACTGAGAACCAAACCAAGCCTGCAAAGAAAGATGGGAAGCTATCCCCTTATTACTATGACGATGCCTCGGATCATGGAAGTGTTGTTTAA 3087 0.5083 VSHSNKLSIHFTLTSNTHHSTLCRRGKARMTQPLPIVACVLLSAVAWVACLNQEGLYLYQLKLSLDDPYSTLSSWNSRDATPCNWYGVTCAGDASNTTVTELDLSNTNIGGPFLANVLCRLPNLLSINLFNNSINQTLPLDISLCLSLRHLDLSQNLLTGPLPATLPLLPNLRYLDLTGNNFSGPIPDSFGTFQNLQVLSLVSNLLEGTIPPSLGNVSSLKMLNLSYNPFFPGRIPPELGNLTNLEVLWLTQCNLVGVIPASLGNLNKLQDLDLALNDLYGSIPSSLTQLTSLTQIELYNNSLSGELPRGMGNLTRLRLLDASMNHLTGRIPDELCSLPLESLNLYENRFEGELPASIADSENLYELRLFGNRLTGRLPANLGKNSQLRWLDVSSNQFWGPIPATLCDKGALEELLVIYNLFSGEIPASLGTCQSLTRVRLGFNRLSGEVPAGIWGLPRVYLLELVDNSFSGSIARTIAGAGNLSLLILSKNNFSGTIPDEVGWLENLVEFSASDNKFRGSLPDSIVNLGQLGILDFHNNRLSGELPKGIRSWKKLNDLNLANNEIGGKIPDEIGGLSVLNFLDLSSNRFSGKVPHGLQNLKLNQLNLSYNRLTGELPPLLAKVMYRSSFLGNPGLCGDLKGLCDGRGEAKSVGYVWLLRAIFVVATLVFLVGVVWFYFRYKNFQDAKRAIDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEVVAVKKIWGGVRKEVESGDVEKGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRCKIAVDSAEGLSYLHHDCVPAIVHRDVKSNNILLDGDYGARVADFGVAKAVETTAKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDLVKWVCTTLDQKGVDHLIDSRLDSCFKEEICKVFNIGLMCTSPLPVNRPSMRRVVKMLQEVGTENQTKPAKKDGKLSPYYYDDASDHGSVV* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2396 1028 Pfam Leucine Rich Repeat 147 166 IPR001611 GO:0005515
Pvu2g2396 1028 Pfam Leucine Rich Repeat 244 266 IPR001611 GO:0005515
Pvu2g2396 1028 SMART LRR_typ_2 169 192 IPR003591 -
Pvu2g2396 1028 SMART LRR_typ_2 314 338 IPR003591 -
Pvu2g2396 1028 SMART LRR_typ_2 242 265 IPR003591 -
Pvu2g2396 1028 SMART LRR_typ_2 266 290 IPR003591 -
Pvu2g2396 1028 SMART LRR_typ_2 193 217 IPR003591 -
Pvu2g2396 1028 SMART LRR_typ_2 529 553 IPR003591 -
Pvu2g2396 1028 SMART LRR_typ_2 121 145 IPR003591 -
Pvu2g2396 1028 SMART LRR_typ_2 577 600 IPR003591 -
Pvu2g2396 1028 Gene3D Ribonuclease Inhibitor 49 231 IPR032675 -
Pvu2g2396 1028 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 36 1010 - -
Pvu2g2396 1028 MobiDBLite consensus disorder prediction 1003 1017 - -
Pvu2g2396 1028 PANTHER LRR RECEPTOR-LIKE KINASE 36 1010 - -
Pvu2g2396 1028 SUPERFAMILY L domain-like 363 619 - -
Pvu2g2396 1028 MobiDBLite consensus disorder prediction 999 1028 - -
Pvu2g2396 1028 SUPERFAMILY RNI-like 101 448 - -
Pvu2g2396 1028 Pfam Protein kinase domain 717 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g2396 1028 ProSiteProfiles Protein kinase domain profile. 715 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g2396 1028 Gene3D Ribonuclease Inhibitor 232 340 IPR032675 -
Pvu2g2396 1028 SUPERFAMILY Protein kinase-like (PK-like) 710 995 IPR011009 -
Pvu2g2396 1028 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515
Pvu2g2396 1028 ProSitePatterns Protein kinases ATP-binding region signature. 721 744 IPR017441 GO:0005524
Pvu2g2396 1028 Gene3D Ribonuclease Inhibitor 341 646 IPR032675 -
Pvu2g2396 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 847 859 IPR008271 GO:0004672|GO:0006468
Pvu2g2396 1028 Pfam Leucine rich repeat N-terminal domain 52 90 IPR013210 -
Pvu2g2396 1028 Gene3D Transferase(Phosphotransferase) domain 1 803 1021 - -
Pvu2g2396 1028 SMART serkin_6 715 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g2396 1028 Gene3D Phosphorylase Kinase; domain 1 699 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2396 Pvu-Chr2 39848019 39851896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2396 48 1028 Receptor kinase-like Gene Family AT1G28440 71.964 0.0 1436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pvu2g2396 Pkinase 4.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2396 - - gmx:100819887 1766.13