Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2392 ATGGAGGAAGAGGGTTATTCGGAGGGAGACAATAATCGGAAAAGGGGTGGCACAGACGATGATAGCAATGAGAATAACAACAACAACAACACCAATCACGGAAGTAGTAGCAAGATTGTGAATTCTAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAAACCCCTTTTCAACTTGAAACCCTTGAGAAGGCTTATGCTGTGGATAATTACCCGTCGGAGACGATGAGGGGAGAACTTTCTGAGAAATTGGGTTTGTCGGATCGGCAGCTTCAGATGTGGTTCTGCCATAGGAGGTTGAAGGACAAGAAGGACTTGACGTCCAAGAAACTGCCACGAAAGGTGGTGGTAGAGCCTTTGCCGGAATCACCTACAGATGACCCCATGTTGGGCCCTCAGGAGCTTGGTAATGAGTATGGATCCGGGTCCGGTTCAGGGTCCAGCCCTTATGCCCGAGTGGAGCCCCTGAACATTGTTCCCCGGGGTGTGCCTGGTTATTACGAGTCCCCACGGGCTATGATGGAGAACAGAGCAATTTCTTGTGTTGAAGCGCAGTTAGGGGAGCCGTTGAGGGAAGATGGACCAATTCTAGGAGTAGAGTTTGATCCATTGCCACCAGATGCCTTTGGGGCACCTATAGTTACAGAACAGCAGAAGCTACCTACTTTTGCCTATGAAAGTAAAATATATGAAAGACATGATGTTAGAGCTAATAAGGCTATGACAAGGACATTCCGTGACTATCGATCTCTACCAAGCCAGTCTGGCACTAGGTCAGATACTTCTGGCCCGTTCAGCAAATCTCATTTACATGATCCAATAGAAGGTCCTGCCAGAAATCCTCATTTGGCCCTTGGAAATGAAACTATACCTAGAATTCGTGCTGGTCAAGGTCAATTCCGTGGTCGTCTTTTGTCTCAACAAGATAAGCAATTGATTCCCAATCAATCTCCTACGAGGGATGATAATGCTGCCCCAATTAGGGAAGTGGACCCAACCATACTTAATGTTGGAACAAGCTCTCACTTTACTGATCACCAAATTGTTGTGCCAGAAAATCTCCATTCTCAACCTAGTGGTCAAGTTTTGCATAACAACAATGCAACACGCATTGAGAAAAAACGAAAGAGTGATGATGTCCGTGATGGAGAAGCACATGAGATGAAAATCCGGAAAGAGATTGAGAAGCAAGATAACCTTAGACGAAAGAATGAAGAGAGGATGAGAAAAGAAATAGAGAAACAAGACCGTGAAAGAAAGAAGGAAGAAGAGAGGTTAATGCGTGAGAGACAACGGGAAGAGGAAAGAGCAAGACGTGAGCAAAAACGTGAACTTGAGCGAAGGGAAAAGTTTTTGCTGAAAGAAAATTTAAGAGTAGAAAAAATGAAGATAAGAGAAGAGCTTCGCAGAGAGAAAGAAGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCAACTGCCCGTAGAATAGCTAAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATCCATCTTGATTTTGATACTTTGCAACATGTTGAGTCATTTAGGGATTCATTGTGCGTTTTCCCACCAAAGAGTGTAAAGCTAAAAAAACCATTTGCAATCAAACCCTGGATGAACTCAGAGAAGAATGTTGGCAATCTTCTCATGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTGGAGTTATGGTCTTTCACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATGATTCAAGATTATTGGGTGAGATACATGTTGCTCTTCTTAAGGTGGTAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGAATGAATCAAAATGGTGCTGCTAACTCTGGAGGTGGTCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGCTTTGACATACGGAATTGGCATAAGCACTTGAATCTATTGACGTGGCCAGAAATTTTCCGACAGCTGGCTTTATCTGCAGGATATGGACCACAGTTGAAGAAAAGAAGTACTACCTGCTCATATGCAAATAATAAAGATGAGGGAAGAAGTTGTGAAGATATCATTTCTAAACTTCGTAATGGTTCAGCGGCTGAAAATGCAGTTACAAAAATGCATGAGAGAGGTCTGTTAGCCCCTCGAAGATCTAGACATCGATTAACTCCTGGTACAGTTAAATTTGCAGCATTTCATGTTCTATCACTTGAGGGTGACAAGGGATTGACAGTACTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGAGACCTGACGACCAGCAAAACACCTGAGGCATCAATTTCTGTTGCTTTAACAAGAGATACCAAGCTTTTTGAAAGAATAGCACCGTCAACATATTGTGTACGTCAGGCATTTAGAAAGAACCCTGCTGATGCTGAGTCCATTCTTTCAGATGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGAGGAGGATACTGATGATGTTGAAAGAGAAGAGTCAGAGAGTGACGAAGTTGACGAGGACCCTGAAGTTGATGATTTGGTAAATTCGTCAAGTGCTAACAAAACATCTGGACCTTGTGATGATTTCTCATCCAATGGAAAAGAAAATTTGGGCCATGATGTTGGACTTCAGGGTGAGTTTGATAAGGATCTGCCTCGTTTTCCTGAGAGTGGTTCCAAGAAGATTGATACTCCAATTGCTGTAACCGGGAAACCTGGTGCTTGTGAAGATTTAAATGTTGGAAATCTTGGTGAAGATAATATGGAAATTGATGAAAGCAAGCCTGGAGAGTCATGGGTTCAAGGGCTTGCAGAAGGAGAATTTTCTGACCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGTGTTGGTTGGTGTGGCAAATGAAGGAAACTCAATCCGTGTTGTTCTAGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGAAGCACAACTAGATAAATTTCGATTAAAAGATGATATTTTCAGTAAATCTGATTTTCCATCTATCAATGGGAATAAAGTTGAAATACAACATTCTTGTTCTGCCATGGAGGGAAACCAAAGCCCATCATTGCTTGGCAACAATTGTAATAATGTGCCCTCTCCCGGCACTGCAGAAAATCAAAAAGCAGCTCCAGGTGTACAGAGCATGTCTATTGAAAAACACTCTTCAGTTCAAGATCTCTGCACTGGCCCAGATAACCCTCAGATTCAGACATTTGCACAGTATTCAAAAAGGTCACGGTCTCAACTGAAATCTTATATTTTCCACATAGCAGAGGAGATGTGTGCCTACAGATCCTTAACCCTTGGGCAAGATCGAAGACGTAACCGTTATTGGCAATTTGTTGCATCTGCTTCTTCCAATGATCCTGGCTCTGGCAGGATCTTTGTTGAGTTCCTCGATGGTAATTGGAGGCTTATTGATACTGAAGAGGCCTTTGATGCACTTCTGATTTCGCTTGATTCACGTGGGGTCAGGGAATCTCATTTGCGACTAATGTTGCAAAAGGTTGAGAGTTCCTTCAAGGAAAATGTTCGTAAGAATACACAATGTTCCAGAGTTGGAAGCAGAGGCGAAACATGTGTTAAAAATGAAGCTGACGAAACAGATTCCAGCCCTGATCGCCACACTGGATCTGACAGTCCCAGCAGTACCCTTTGTGGCTTGAACTCTGACAGTTTGGAAACTTCGTCATCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAATCTGCCTTGAGAAGGTATCAAGATTTTCAAAAGTGGACATGGAAAGAATGCTATAACTCATCAATATTATGTGCCATGAAATACGGGAAGAAAAGAGGCAAATCTCAGGTTGTCGTCTGTGATATCTGCCTCAATCCTTATTTCTTTGAAGACTCCCATTGCAATTGTTGCCACCGGACTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTGGAGAAAAGTTATCAAAAGATATTTGTGTTTTGGATTCAAATCTTCCCTTACGGACAAGATTGCTTAAGGCCCTGCTAGCCCATATTGAGGTTTCTATTCCACCTGAAGCATTTCAATCAAATTGGATCGAAGATATTAGGAGGCATTGGAGTGTGAAGTTGAGCAAATCATCTTCTGTAGAGGAACTGCTGCAGATATTGGCCCTACTTGAGAGAGCATTGAAGCGGGACTTTCTATCATCAACCTTCTCTACAACAGGGGAACAATTGGGGTTGAACACTATGTCAGAGAATGTTGCACAAACCTCCGCTGATTCTGAATCAGTTGCTGTACTTCCATGGGTTCCACTGACAACTTCAGCCGTGTCTCTCAGACTTTTTGAGTTTGATGAATCAATTGTCTACTTACTGCATGAGAAACCTGAACCTTCTGAGGAGAAAGAAGATAGGCAATACATAAAGCTTCCTTCAAGATACAATGCTTCCAAATCTATTAAAGTGGTTGAAACAGCAGACTTGGACTGTGATGAATTCATGAAAGTTAAATCAAATCCTGCAAAAGTTGTGCAAAACAACAATAAACGAGGACGAGGTAGTTCTGTCAAAGGACGGGTTAAAAATATATCTAAAACCAAACGAAATAATGGCCGTCGGCGCAGTGCTAAGGTTGCTGGGAATCTAAATCAAAGGGTAAAACAACAGGGAGGGGGATCACAAGGACAAGCTAGTGGACGTGGTCGTCGAACAATTCGGAAAAGAAGAGTGGGGAAAAAGGCTGTTGAAGATCTGTTGCTTGGCCATAGGGGTGCCTCTCATAGCTCCAACATTGCTAAAGAATCATTAAGAAGCTTGGATGAGGAGTGGGATGATGAAAAGGGAAGTCCCATGACTCCAATCCACATGGGGACTGCTAACATTAGTAACAGCACTGAAGAGGCTGAATCTGATGACAATGTCCAAGCAATGGAGTCTGATGACAATGTCCAAGCAGTGGAATCTGATGACAATGGCCAAGCTGTGGAATCTGATGACAATGGCCAAGCTGTGGAATCTGATGACAATGGCCAAGCTGTGGAATATGATAAAGGAAACTGGGAAATAGGTTTTAATGGTAATCCCAGCCGATGGCGGGAGGATATGGTTGGAATGAGTGATGAAGATGTGGAAGCTTCTGAAGATGAGAATCAGAACGAGAATGGCATTGAAGAGAATGAAGAGGAGGATTCGGATGCAGATGCAGATGTTATGAGCGAGGAGGGTTCAGATGGTACTGCAAACAGAATTGTAAATGAAGAAAGCTCAGACTCAGATGTCTCTGAAGATTCTTCTGATTAG 5370 0.4261 MEEEGYSEGDNNRKRGGTDDDSNENNNNNNTNHGSSSKIVNSNEGQSKPKRQMKTPFQLETLEKAYAVDNYPSETMRGELSEKLGLSDRQLQMWFCHRRLKDKKDLTSKKLPRKVVVEPLPESPTDDPMLGPQELGNEYGSGSGSGSSPYARVEPLNIVPRGVPGYYESPRAMMENRAISCVEAQLGEPLREDGPILGVEFDPLPPDAFGAPIVTEQQKLPTFAYESKIYERHDVRANKAMTRTFRDYRSLPSQSGTRSDTSGPFSKSHLHDPIEGPARNPHLALGNETIPRIRAGQGQFRGRLLSQQDKQLIPNQSPTRDDNAAPIREVDPTILNVGTSSHFTDHQIVVPENLHSQPSGQVLHNNNATRIEKKRKSDDVRDGEAHEMKIRKEIEKQDNLRRKNEERMRKEIEKQDRERKKEEERLMRERQREEERARREQKRELERREKFLLKENLRVEKMKIREELRREKEAERRKAALEKATARRIAKESMELIEDEQLEMMELAASSKGFSSIIHLDFDTLQHVESFRDSLCVFPPKSVKLKKPFAIKPWMNSEKNVGNLLMVWRFLITFADVLELWSFTLDEFVQAFHDYDSRLLGEIHVALLKVVIKDIEDVARTPSTGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNLLTWPEIFRQLALSAGYGPQLKKRSTTCSYANNKDEGRSCEDIISKLRNGSAAENAVTKMHERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGDKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRQAFRKNPADAESILSDARKKIQIFENGFLAEEDTDDVEREESESDEVDEDPEVDDLVNSSSANKTSGPCDDFSSNGKENLGHDVGLQGEFDKDLPRFPESGSKKIDTPIAVTGKPGACEDLNVGNLGEDNMEIDESKPGESWVQGLAEGEFSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQLDKFRLKDDIFSKSDFPSINGNKVEIQHSCSAMEGNQSPSLLGNNCNNVPSPGTAENQKAAPGVQSMSIEKHSSVQDLCTGPDNPQIQTFAQYSKRSRSQLKSYIFHIAEEMCAYRSLTLGQDRRRNRYWQFVASASSNDPGSGRIFVEFLDGNWRLIDTEEAFDALLISLDSRGVRESHLRLMLQKVESSFKENVRKNTQCSRVGSRGETCVKNEADETDSSPDRHTGSDSPSSTLCGLNSDSLETSSSFKIELGKSESDKKSALRRYQDFQKWTWKECYNSSILCAMKYGKKRGKSQVVVCDICLNPYFFEDSHCNCCHRTFPSNNGFNFSKHAFQCGEKLSKDICVLDSNLPLRTRLLKALLAHIEVSIPPEAFQSNWIEDIRRHWSVKLSKSSSVEELLQILALLERALKRDFLSSTFSTTGEQLGLNTMSENVAQTSADSESVAVLPWVPLTTSAVSLRLFEFDESIVYLLHEKPEPSEEKEDRQYIKLPSRYNASKSIKVVETADLDCDEFMKVKSNPAKVVQNNNKRGRGSSVKGRVKNISKTKRNNGRRRSAKVAGNLNQRVKQQGGGSQGQASGRGRRTIRKRRVGKKAVEDLLLGHRGASHSSNIAKESLRSLDEEWDDEKGSPMTPIHMGTANISNSTEEAESDDNVQAMESDDNVQAVESDDNGQAVESDDNGQAVESDDNGQAVEYDKGNWEIGFNGNPSRWREDMVGMSDEDVEASEDENQNENGIEENEEEDSDADADVMSEEGSDGTANRIVNEESSDSDVSEDSSD* 1790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 22 54 - -
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 372 441 - -
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 1 57 - -
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 1219 1248 - -
Pvu2g2392 1789 Pfam Homeodomain 48 104 IPR001356 GO:0003677
Pvu2g2392 1789 ProSiteProfiles HARE-type HTH domain profile. 740 809 IPR007759 GO:0006355
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 837 884 - -
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 1645 1660 - -
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 837 862 - -
Pvu2g2392 1789 CDD homeodomain 50 104 IPR001356 GO:0003677
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 249 266 - -
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 7 21 - -
Pvu2g2392 1789 SUPERFAMILY Homeodomain-like 33 104 IPR009057 -
Pvu2g2392 1789 Pfam HB1, ASXL, restriction endonuclease HTH domain 740 808 IPR007759 GO:0006355
Pvu2g2392 1789 Gene3D - 32 107 - -
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 863 880 - -
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 1233 1248 - -
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 1619 1789 - -
Pvu2g2392 1789 SMART testlast3 558 617 IPR018501 -
Pvu2g2392 1789 ProSiteProfiles DDT domain profile. 558 617 IPR018501 -
Pvu2g2392 1789 Coils Coil 400 485 - -
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 249 277 - -
Pvu2g2392 1789 PANTHER HOMEOBOX DOMAIN PROTEIN 16 1789 - -
Pvu2g2392 1789 Pfam DDT domain 560 614 IPR018501 -
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 119 152 - -
Pvu2g2392 1789 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 946 988 IPR028942 -
Pvu2g2392 1789 SMART HOX_1 47 109 IPR001356 GO:0003677
Pvu2g2392 1789 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1122 1194 IPR028941 -
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 1571 1590 - -
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 1624 1639 - -
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 1730 1762 - -
Pvu2g2392 1789 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 1534 1602 - -
Pvu2g2392 1789 MobiDBLite consensus disorder prediction 1667 1697 - -
Pvu2g2392 1789 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 16 1789 IPR044977 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2392 Pvu-Chr2 39779761 39789737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2392 41 1717 Homeobox Transcription Factor Family AT1G28420 47.374 0.0 1291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pvu2g2392 WSD 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2392 - - gmx:100784945 2685.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2392 2 39779761 39789737 Pvu2g2392 2 39779761 39789737 ECH
Pvu2g2392 2 39779761 39789737 Pvu6g1889 6 29136907 29147043 PCT