Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2368 ATGGACAACTTTCCTGACCCAGTTTCAGCAACCACCACCAACCCATTAATCCTTGAACAACGAAGCATGGGAGAACTAAATAATGTTAACTTCCCTGTTGACAACAGTGGACATGTTGGCTTTCCTGACCCTTATTACGCTCCATTTGACCAGAACATGCAGTTCCAACAAGTGAACCAATATCCTTTGCATACCCTTCAAACAGGACAACCTAATGCAATTTATGGGGCACCAAATTCTGAAGTTCAAGGGTGGTCACAACAACAACCAGAGGAAGAAGAATATAGAAAGAGTGTGGGAACATTGACTAGCAAAGTTGCTAGGGACAAAAGGAAACAAGTAAGACAGAAGAGTAAGAGTGTTCCTGTGGCTCCTTTGGTACCAACAAAAGGGATAATAAAGGAACAACCTGTTCCTGGAGGAGGATCAGATGGAAAGCTCACTATCAACCAAGATAGAATTTTCGCTGTTTTTTGCAGCCCAGATGGGAAGTTAGAGGAAGTTTTCACAAAGCAGTTGAAGAATAGTGACGTTAGTGTCCTAGGTCGCATTGTGCTCCCAAAGAGGGAGGTTGAGGCGAAGCTTCCACCATTGACAGACAAGGAAGGAAAGGATATTATGGTCAAGGATGTTTATTCTGGGATGATATGGACCTTGAAATACAAGTATTGGTCCAATAACAGAAGTAGAATGTATGTTCTCGAAAATGCAGGGGATTTAGTGAACCATTATGAACTACAAATGGGAGATTTGATAACCATTTACGAGGACGAAAGGAAAAATCTGTATGTGTGGGCTAGAAAAAAGAGAAATCCAGAAGGCGCGGTGTCTTTGTCAAAGAAAGAAGTTGAAGATGCTAACAACCTTTTGACTTCGATCAATGGTGGTGGAAGTTCTCCAAGTGGAGCAAAATTAGGTATGAATATAGCAGAACGTGATCAATTGTCGAACATTGCTGGAAACGGGGCACCAAGCCAAACAACCATCGAAGCCACACCACCAGCACTACCAGCACCACCTGCACTACCAGCACCTTTTGGTGGCAATAACCAGTGGATAAGTGATGAAGATGTCTACGGGGGCCTTGACAATATCTTCGAAATTGAGAATAGTTTTCATAGTTTTGATCACTTGAAAGATTACAAGACGTGGCCCTATTGA 1161 0.4246 MDNFPDPVSATTTNPLILEQRSMGELNNVNFPVDNSGHVGFPDPYYAPFDQNMQFQQVNQYPLHTLQTGQPNAIYGAPNSEVQGWSQQQPEEEEYRKSVGTLTSKVARDKRKQVRQKSKSVPVAPLVPTKGIIKEQPVPGGGSDGKLTINQDRIFAVFCSPDGKLEEVFTKQLKNSDVSVLGRIVLPKREVEAKLPPLTDKEGKDIMVKDVYSGMIWTLKYKYWSNNRSRMYVLENAGDLVNHYELQMGDLITIYEDERKNLYVWARKKRNPEGAVSLSKKEVEDANNLLTSINGGGSSPSGAKLGMNIAERDQLSNIAGNGAPSQTTIEATPPALPAPPALPAPFGGNNQWISDEDVYGGLDNIFEIENSFHSFDHLKDYKTWPY* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2368 386 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 58 373 IPR044800 GO:0003700
Pvu2g2368 386 CDD B3_DNA 169 264 IPR003340 GO:0003677
Pvu2g2368 386 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 58 373 - -
Pvu2g2368 386 SMART B3_2 169 270 IPR003340 GO:0003677
Pvu2g2368 386 Pfam B3 DNA binding domain 169 269 IPR003340 GO:0003677
Pvu2g2368 386 Gene3D - 161 276 IPR015300 -
Pvu2g2368 386 MobiDBLite consensus disorder prediction 81 100 - -
Pvu2g2368 386 SUPERFAMILY DNA-binding pseudobarrel domain 168 273 IPR015300 -
Pvu2g2368 386 ProSiteProfiles B3 DNA-binding domain profile. 169 270 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2368 Pvu-Chr2 39562318 39565922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2368 164 264 B3 DNA Binding Superfamily AT1G28300 59.406 1.49e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu2g2368 B3 4.6e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2368 - - var:108339602 465.307