Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2361 ATGGAGAACAACCCTAGTTCATCAAAAAGTGATAGAAAATTCGTTGAGAGGGATAGAAGAAGCCAAATGAAGGATCTTTTCTCCAAGCTCAACTCAGTACTGCCTCATCAAAGCTCAAGGGAGAGAATTTCACGGCCAGATCAGATAGGTGAAGCCACAGACTACATAAAGAATTTACAGATTAAGTTGGAGAAAATGAAGGAGAAAAAAAGCAACCTAACAGACATTGAAAGGTCAAGAAATGATAGCATGAATATGGGGGTGAAATCTTCAGAATTTAAGATCCAACAAATGGGTTCAACCTTGGAGGTTGTTCTAGTAACTGGGTTGGATTGCCAATTCATTTTCAATGAGACCATTCGTATTCTTCAAGAAGAAGGATCAGACATAGTTAATGCCAGTTATACAGTTGTTGAAAATGCAGTTTTCCATACAATACACTGTCAGGTAGATGAATCTGCCAATGGAGCTTTTAGGATATCGGAGAAACTGAAGAATTATGTCAATGGACGGTAG 516 0.3837 MENNPSSSKSDRKFVERDRRSQMKDLFSKLNSVLPHQSSRERISRPDQIGEATDYIKNLQIKLEKMKEKKSNLTDIERSRNDSMNMGVKSSEFKIQQMGSTLEVVLVTGLDCQFIFNETIRILQEEGSDIVNASYTVVENAVFHTIHCQVDESANGAFRISEKLKNYVNGR* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2361 171 Gene3D - 2 75 IPR036638 GO:0046983
Pvu2g2361 171 Pfam Helix-loop-helix DNA-binding domain 13 60 IPR011598 GO:0046983
Pvu2g2361 171 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 169 IPR015660 GO:0003700|GO:0006357
Pvu2g2361 171 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 72 IPR036638 GO:0046983
Pvu2g2361 171 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Pvu2g2361 171 Coils Coil 49 76 - -
Pvu2g2361 171 PANTHER TRANSCRIPTION FACTOR BHLH162 1 169 - -
Pvu2g2361 171 SMART finulus 13 65 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2361 Pvu-Chr2 39479926 39481216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2361 3 170 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 43.407 4.63e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu2g2361 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2361 - - gmx:100810793 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2361 2 39479926 39481216 Pvu6g1915 6 29365223 29366725 PCT