Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2356 ATGGCCTTTGAGCACTGCGTTTCGCAGCAATGGAAAACCATCCCAAGCCCCGTGACTGTGACAGAAAATTTTGATGGGTGTTTTGATTGCAATATCTGCTTAGATTTTGCACATGAACCAATTGTTACCCTCTGTGGTCACCTATACTGCTGGCCTTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCTGATGAGCACCCACAATGCCCTGTTTGCAAGGAAGATATATGCCACACCACAATGGTTCCTCTCTATGGCCGTGGCCAGGCCATAGCTCATAGTGACCGTGATGTGAAGGCTTCCTATAGAGGTGTTTTCATTCCACCAAGACCACCTGCTTTGGGTACTCAATCTCTCGTGCCAACATCATCTCAAAGTGGTCAGCAACTTCCATATCGTAATCCTTATCAGAGTCAGCATTCCAACCCTCCTTTATACCAAGAAGAGGATGAATCATCATCACAAATGCTTCTCAGTCCTGGTGCAATGGCACCGGGGTTCCCCCACCTCGTGGTTGGGATGTTTGGAGAGATGTTTTATACCCGAGTCTTTGGCAACTCAGAAAATGTATACACTTACCCAAATTCTTATCACCTGGCAGGAAGTAACAGCCTCAGGTTGAGAAGGCAAGAGATGCAGGTAAACAAATCACTGAATAGAATTTCAATTTTTCTCTTCTGTTGCTTCCTTCTATGTCTCATCGTCTTCTAA 723 0.4564 MAFEHCVSQQWKTIPSPVTVTENFDGCFDCNICLDFAHEPIVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKEDICHTTMVPLYGRGQAIAHSDRDVKASYRGVFIPPRPPALGTQSLVPTSSQSGQQLPYRNPYQSQHSNPPLYQEEDESSSQMLLSPGAMAPGFPHLVVGMFGEMFYTRVFGNSENVYTYPNSYHLAGSNSLRLRRQEMQVNKSLNRISIFLFCCFLLCLIVF* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2356 240 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Pvu2g2356 240 SMART ring_2 30 76 IPR001841 -
Pvu2g2356 240 CDD RING-HC_AtRMA_like 28 77 - -
Pvu2g2356 240 MobiDBLite consensus disorder prediction 117 156 - -
Pvu2g2356 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 240 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pvu2g2356 240 SUPERFAMILY RING/U-box 22 90 - -
Pvu2g2356 240 MobiDBLite consensus disorder prediction 120 156 - -
Pvu2g2356 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 106 IPR013083 -
Pvu2g2356 240 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Pvu2g2356 240 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Pvu2g2356 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2356 Pvu-Chr2 39343359 39345694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2356 7 226 C3H Transcription Factor Family AT4G27470 38.288 7.31e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2356 K10666 - gmx:100779793 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2356 2 39343359 39345694 Pvu6g1928 6 29477128 29479236 PCT