Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2354 ATGGTTGATAAGAATGTGTTAGAGCTGAACCTTGGTTTAGGTCACAACAACTTTGGTGGTGATGCACATGTAGGGCAGTCACCAAGGCAGAGGTGCCCACCACCATTTCTGTTGAAGACCTATGATTTGTTGGAGGAAGGTGAAGGTGAAGATATCACCAAAATTGTGTCTTGGAATGCAGAAGGAACTTCCTTTGTTGTGTGGTCTCCTGCTGAATTCTCTGAGCTCACCTTGCCTAGATACTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAACACATATGGATTTAAGAAAATGTCATCGAAAAGATGGGAATTCAAGCACGAGAAATTTCAGAGGGGTTGCAGGCAGATGCTAGGTGAAATCACAAGGAAAAAGTGCGAGCCAAGTGTTTTTCCTGCATACCTCAAGTCTTCTTCTGAGGAAAATGCATCGAGTTCTACAGAAGAAAACAATCAGCAACTACTTATGGAGGAGAACAAGAACCTTAAGAAGGAGAGATTAGAGCTTCAAATGCAGATTGATGAATGCAAAGCACTTGAAATGAAGTTGTTGGCATGCCTCTCTCAGTTTATGGATACCCACCAAACTAAACTTAGGAAACTCTGTTAA 621 0.4187 MVDKNVLELNLGLGHNNFGGDAHVGQSPRQRCPPPFLLKTYDLLEEGEGEDITKIVSWNAEGTSFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKMSSKRWEFKHEKFQRGCRQMLGEITRKKCEPSVFPAYLKSSSEENASSSTEENNQQLLMEENKNLKKERLELQMQIDECKALEMKLLACLSQFMDTHQTKLRKLC* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2354 206 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE 24 205 - -
Pvu2g2354 206 SMART hsfneu3 32 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g2354 206 Gene3D - 28 129 IPR036388 -
Pvu2g2354 206 Coils Coil 149 186 - -
Pvu2g2354 206 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 24 205 IPR027725 -
Pvu2g2354 206 Pfam HSF-type DNA-binding 36 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g2354 206 ProSitePatterns HSF-type DNA-binding domain signature. 78 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g2354 206 SUPERFAMILY "Winged helix" DNA-binding domain 33 128 IPR036390 -
Pvu2g2354 206 PRINTS Heat shock factor (HSF) domain signature 36 59 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g2354 206 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g2354 206 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2354 Pvu-Chr2 39319738 39321519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2354 21 200 HSF AT5G62020 34.742 1.28e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu2g2354 HSF_DNA-bind 3.7e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2354 K09419 - gmx:100789792 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2354 2 39319738 39321519 Pvu2g2354 2 39319738 39321519 ECH