Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2348 ATGTGGAAGTGCAACCACTCACACGAGAAGCGCGTGTGTGGAGCCAAAGCTAGCTACCAAAACATGAAAGAGGAGTATAAACCAAAGTGTGGTAGAAAGTCTCGATATATGTTATGCTACTTGGGCGAGGGTGTTGATGCGTACACGTGTCCTGACAATCCCACCTTCTTGGCTTTCAAGAACAGCATAGAAGCAACACGAAGCACTCTCTTTCTCTCTCTTCTCTCTCTTCTCTCTTCTCTTCACTCTGTGACTCTCACAGAAACTAGAGACAGAAATATAGCCCAGAAGGGTTTCATTCATCAAACCAATTTCACTCTTCGTTTCTTCTTCCATTTCACAAACTTTGCTTTCTTCCTTGTTTTTTCTGGTGTGATCGCTGCGATGTACGTAGCTTCCATGCGTAAGTCTTTCAAGGACTCCTTGAAAGTCCTTGAAGCTGATATCCAACACGCCAACACCCTGGCGTCAGATTTTCCAAGGGAGTATGATGGTGCGTGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCGCACTTGTTCCTTTTTCTGGTGCAATGGACAGATTGTAATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGGTCTATGTGGATGGGACAACCACCATGTCTACACATGAAAGAAAAGCAAGTATTAGAGAATTCTATGCCGTCATTTATCCCTCTTTATTGCAACTTCAAAAGGGTATCACTGATACCGAGGATAAGAAGCAAAAGGCTGTATGCATGGAGAGGTATCGCAGAAGAGATGATGAGGATTATAGACAGTGTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGATATGAATACTAAGATTGTGTTACCCAACTGCAACCATGCCATGTGCCTGAAATGTTACCGAGAATGGCGAACTATATCACAATCTTGCCCATTTTGCCGTGACAGTCTGAAGAGAGTGAACTCAGGTGATCTGTGGGTATTCACTGATAGAAGGGATGTGGTAGATATGGCAACAGTGACAAGGGAGAATCTGAGAAGGGTTTTCATGTACATAGATAAGTTGCCTTTGATTGTTCCAGACTCCCTTTTTGATGCCTATGACTCTCACGTACGGTAA 1128 0.4326 MWKCNHSHEKRVCGAKASYQNMKEEYKPKCGRKSRYMLCYLGEGVDAYTCPDNPTFLAFKNSIEATRSTLFLSLLSLLSSLHSVTLTETRDRNIAQKGFIHQTNFTLRFFFHFTNFAFFLVFSGVIAAMYVASMRKSFKDSLKVLEADIQHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGITDTEDKKQKAVCMERYRRRDDEDYRQCSDIDIEREDECGICMDMNTKIVLPNCNHAMCLKCYREWRTISQSCPFCRDSLKRVNSGDLWVFTDRRDVVDMATVTRENLRRVFMYIDKLPLIVPDSLFDAYDSHVR* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2348 375 Pfam Zinc finger, C3HC4 type (RING finger) 276 322 - -
Pvu2g2348 375 ProSiteProfiles Zinc finger RING-type profile. 279 317 IPR001841 -
Pvu2g2348 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 326 IPR013083 -
Pvu2g2348 375 PANTHER RING FINGER PROTEIN 41, 151 131 374 - -
Pvu2g2348 375 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 131 374 - -
Pvu2g2348 375 ProSitePatterns Zinc finger RING-type signature. 294 303 IPR017907 -
Pvu2g2348 375 SUPERFAMILY RING/U-box 276 323 - -
Pvu2g2348 375 SMART ring_2 279 316 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2348 Pvu-Chr2 39283696 39288086 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2348 K25840 - gmx:100777318 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2348 2 39283696 39288086 Pvu6g1941 6 29552478 29557537 PCT