Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2316 ATGGACAGCACCGATTCATCATCAGCGTCTCAGCACCCACACCTCCCTCCGGGCTTTCGCTTCCACCCCACCGACGAAGAACTCGTCGTTCACTACCTCAAGAGAAAAGCTTCTTCTACACCCCTTCCCGTCGCCATCATCGCCGACGTTGATCTCTACAAGTTCGACCCCTGGGAGCTCCCAAGTAAAGCAACTTTTGGTGAACAAGAGTGGTACTTTTTCAGTCCAAGGGATCGGAAGTACCCAAATGGGGTGAGACCCAACAGAGCTGCTACTTCTGGGTATTGGAAGGCCACGGGAACTGACAAGCCAATACTAACATCTGATGGGCACCAGAAAGTTGGAGTTAAGAAAGCACTTGTTTTCTACGGTGGAAAGCCTCCAAAAGGGGTTAAAACCAATTGGATCATGCATGAGTATAGGCTTGTTCATGATTCCTTTAACTCGACCTCAAAACCCCCTCCTCTTGTTCCTCCAAACAAGAAAAATTCCCTCAGGCTGGATAATTGGGTTTTGTGTCGAATATACAAGAAAAGCAACAGCAGCATCCTAACAAGGCCACCCTTGATGGAGCAAGGAGAGGAGCTTTCAATGGAGAACATGCTTCCAACGATGTCAACTTTGTCAATGGCTAATAATAATACTCAAAATTCAAAACCTCAATCTTCGAGAGGTACGAGCTATGGACCACTGGGACTTGAAAATGATGACAACTTCTTCGATGGAATCTTAGCCGTTGATCATCAGAGCATGCAAAGTGGTTCTGATTCTCACCTTTTCTCTCCAAACTCAAAGGGTGGCAACTTTCCTATGAAACGTGCACTCACATCACAGCAACTTTGGAACGAGACAGGGTCTCCGGGGTCATCTTCTTCATGTAAGCGATTCCATGGTGATCTTAACAGTGGAACTGAGGACAACGATTCCTTTGTTTCCTTGCTTAGCCAGTTTCCTCAGAACGCAACTTTTCAACCAAACGCGATTCATGGGTCCGTTGGGGATGGTGCGCAGAGACAGCAACAGTTTCAGCTTCCTGGTATAAATTGGAACTGA 1053 0.4682 MDSTDSSSASQHPHLPPGFRFHPTDEELVVHYLKRKASSTPLPVAIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPILTSDGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVHDSFNSTSKPPPLVPPNKKNSLRLDNWVLCRIYKKSNSSILTRPPLMEQGEELSMENMLPTMSTLSMANNNTQNSKPQSSRGTSYGPLGLENDDNFFDGILAVDHQSMQSGSDSHLFSPNSKGGNFPMKRALTSQQLWNETGSPGSSSSCKRFHGDLNSGTEDNDSFVSLLSQFPQNATFQPNAIHGSVGDGAQRQQQFQLPGINWN* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2316 350 MobiDBLite consensus disorder prediction 282 301 - -
Pvu2g2316 350 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Pvu2g2316 350 MobiDBLite consensus disorder prediction 209 231 - -
Pvu2g2316 350 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 304 - -
Pvu2g2316 350 MobiDBLite consensus disorder prediction 1 21 - -
Pvu2g2316 350 SUPERFAMILY NAC domain 8 178 IPR036093 GO:0003677|GO:0006355
Pvu2g2316 350 Gene3D NAC domain 24 182 IPR036093 GO:0003677|GO:0006355
Pvu2g2316 350 MobiDBLite consensus disorder prediction 209 229 - -
Pvu2g2316 350 MobiDBLite consensus disorder prediction 327 350 - -
Pvu2g2316 350 ProSiteProfiles NAC domain profile. 15 178 IPR003441 GO:0003677|GO:0006355
Pvu2g2316 350 PANTHER NAC TRANSCRIPTION FACTOR 56 1 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2316 Pvu-Chr2 38979449 38981396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2316 5 350 NAC Transcription Factor Family AT1G61110 54.342 2.95e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu2g2316 NAM 9.6e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2316 2 38979449 38981396 Pvu6g1959 6 29705815 29707591 PCT