Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2313 ATGGCGGATGAGGAGGTCGACTTTTCGAAACTGTTCCCCGGTGACGATGGCGATGACGACATGTTTTATATAGATATACATACCGTTCAGAAGGTTCTTGATGAAGACGATGATTGTGATTTTCTGGAGAAATTTCCCGAGGATTCTTCATCAAAAAATGTTTCACCCAGTGAATCTGGAACTCATGACACATTTCAGATACAAAATGGGTCTCAAGTGTTAGAAGAACCACAATTTTCTAGGTTGGGCTTTACAGATTCAGTCACCAGTTTTTCTCCATTCTGCTCGGATGCGTCAGATTCTGGTGTCAGAGGTTCAGTTGGTGTATCTGATTCTGTAGCAAATTCTTGGCTTGATTGTGAACCTGAAAACCAGGGACCTCGATCTCAGGCTTGCTCCTCCCCAAATGCATTTCCTGGTAATCTCAGTAACTCACTCTCCCAGGGTGAAAGTGATGAGGTTTTCTGCACAGAAAAGACCAGAGTCTCTAAACATGAGGTGCCTGCTTGTAGTGCGGAATCAAGTTTACCTGAGGCACAGTCAAAAAATATATCAATTTGTGGAGATAATTTGAATCCAAGTCCGTGGAATGGTGAAAATGAGATCCAATTCAAGTATTTGCGAGAGGATGTTGAATTTGAAAATACTTCAATCAGTTCTATCGTTGACAATGATGATGTAAATATTGAAGGATACGTTGAAGACACTATTGGAGGAGTTTCTGGACAACAGGAAAATGATTCGTGTACATCTTTTGAAGCGTTTATGGATGCTGATATATCTTTGCATGTTGCAACTTCATCTGATTCTACTATTGGTCAAGATGACGAAATGATGAATAACATGAAGGCCAAAAATGTGGATTTAAATGCTGATATTACATGTATGAGTAGTGGCATGCCCTCAAACACTACTGGGTGGATGTCTTTTCTAGATTTAAGTGATAATGTTTATCCATCTTTTCATTCTAGTAAAGGTAATTTTGATGACATGTCATCACTGTCTCTTTCAGCTTGTGATTCATACATGCCATATGGAGACCATTACCAAAACAATTTCCACTGTGAGGATGCTAAGTTCAATGTAGGCCAATCTGTGAAACAAACACCTGGTATTTTTTCTTCTGTAGGGTGTCAGGCTTACCAATTTTTTGAGATTGAAGATAATTATGCAGTTATACCTGGGATATCCAATCAAAATCAAGATAGCAATGGTGGAATTGCTAGTTTTCAAGGAAATGTGGACAATTTGAATTTACAAGCTGCAAATATATCTTTGCCCCATGCCCATGCACTAATCACCAGTGAGAAGCAGTTTGGTTCTGTTAAGAGAGAAGGAGGAGTTCAACATAAACTTGTTGATTCTCATCTTTCAAAAGGAAAAATTAAGAATTTCCATGTTGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGACAAGTCGATCTACAATCACTGGGAATTTCTCTAGTATTTCTCAATCTTCTGGATATGCCAATCCTCAGTCTTACATGGTTGGAAGTACTAAGCTGAAGGCATGTGATGAGCGTAATATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAACTTAATCTACCAGAAGGGTTGTTGGCAGTTCCTCTCTTAAGGCATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAGCATCAAGTTTATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAGTATCAACTATTGCATTGATATTAAAGGAAAGACCTCCATTACTTAATGGGTGCACCAATGCCCACAAAAGTGAATTGGATCTGAATCTGGATGTGGATGATGACGTGCTTCCTCAGAATGGTCGAGTAAAGGAAGAATCTAATATTTGTGAGGATAAGTCAAGTAGATATCCAGTCAAGAGCATGAATTTGCTAAACCAAGCAAAGGGAAGGCCATCTGCCGGGACCCTTATTGTTTGTCCCACTAGTGTCCTACGTCAATGGGCAGAGGAGTTGCGTAGCAAGGTAACTAGTCAAACAAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGGACAAAAGATCCTTATGAGGTTGCTAAGTATGATGTTGTTCTAACAACTTATTCCATTGTCAGCATGGAGGTTCCTAAGCAGCCTTCAGCTGACAAAGATGATGAGGAAAAAGGAAATGTTGAAGATCAGGCTGTATCAAGCAGGAAAAGAAAATGTCCCTCTAATTCTAGTAAAGGTGGCAAGAAGAGATCAGATGGAACAGTTCCTGAGGCTAATGCTCGACCGCTTGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCCCAAAGTATAAAAAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCGAAGCGAAGATGGTGTTTGTCAGGGACTCCTATCCAGAATGCAATTGACGATCTCTACAGTTACTTCAGATTTTTAAGATATGACCCGTATGATGTCTATATATCATTTTGTTCTAAAATTAAGAATCCAATTAGCAGAAATCCAACAAACGGATATAGAAAGCTACAAGCTGTCTTGAAGACTATAATGTTACGCCGGACCAAGGGTACACTTCTTGACGGGGAACCTATTATTTCCTTGCCGCCTAAATATATTGAGCTGAAAAAAGTTGATTTTTCAATGGAGGAACGTGATTTCTATTACAAACTAGAGGCTGATTCACGTGCACAGTTCCAGGAATATGCTGATGCTGGAACTGTCAAGCAAAATTATGTCAACATTTTGCTGATGCTCCTGCGCCTCAGACAAGCTTGTGATCACCCTTTGCTTGTGAAGCGATACAATTCAAACTCTCTATGGAGATCTTCAGTTGAGATGGCAAAGACACTTCCTCAGGAAAAACAAATCTCTCTTCTGCAATGTTTAGAGGCTTCTTTGGCCCTCTGTAGTATTTGTAATGATCCTCCTGAAGATGCGTTTGTTTCAGTTTGTGGCCATGTTTTCTGTAACCAATGCATATGTGAACATCTTACCGGTGATGACAACCAGTGCCCTGCTGCAAATTGTAAAAATCCACTGAGCACATCTAGGGTATTTTCAAAAGCCACTCTGAACAGTTGTCTTTCTGACCAGGGTTGTGATAATTCACCTGGTTGCTCTGGTTCCGAAGCTGAAGAATTTGAGCCTTGGTCTCAAAGTCAGCCATATGAATCTTCAAAAACAAAGGCTGCACTTGAGGTTTTGAAGTCACTGTGTAAGCCACAGTCCTATACATCAAAAAGCTCTTCTGAGCATAGCACTTTCAGGAAAGATAATGATTGCCCTGGGAACCCCTCCAATGCTGACAATGGGAAATCCTTCATAGATTCTCATGAGCATCAAAATTTGTCTGATGATAATAGATGCCATGGTGATTCAGTTACTGTCGTAGGGGATAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGCGTGTCTCAAGAAATCTTCTATTAATTATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCCGAGGTATCAGTTATAATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACTTGGTGGTAGCTTCCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGTCTGTCTTGAGATTAACTGTGAAAGATACAGTTGAAGATCGAATTTTAGCTCTGCAGCAAAAGAAGAGAATGATGGTTGCATCTGCTTTTGGGGAGGATGGAACTGGTGATCGTCAGAGTCGCCTCACTGTGGATGATTTGAAATATTTATTCATGATGTGA 3915 0.4041 MADEEVDFSKLFPGDDGDDDMFYIDIHTVQKVLDEDDDCDFLEKFPEDSSSKNVSPSESGTHDTFQIQNGSQVLEEPQFSRLGFTDSVTSFSPFCSDASDSGVRGSVGVSDSVANSWLDCEPENQGPRSQACSSPNAFPGNLSNSLSQGESDEVFCTEKTRVSKHEVPACSAESSLPEAQSKNISICGDNLNPSPWNGENEIQFKYLREDVEFENTSISSIVDNDDVNIEGYVEDTIGGVSGQQENDSCTSFEAFMDADISLHVATSSDSTIGQDDEMMNNMKAKNVDLNADITCMSSGMPSNTTGWMSFLDLSDNVYPSFHSSKGNFDDMSSLSLSACDSYMPYGDHYQNNFHCEDAKFNVGQSVKQTPGIFSSVGCQAYQFFEIEDNYAVIPGISNQNQDSNGGIASFQGNVDNLNLQAANISLPHAHALITSEKQFGSVKREGGVQHKLVDSHLSKGKIKNFHVEEDPDVCIIEDISHPAPTSRSTITGNFSSISQSSGYANPQSYMVGSTKLKACDERNILRVALQDLSQPKSELNLPEGLLAVPLLRHQRIALSWMVQKEASSLYCSGGILADDQGLGKTVSTIALILKERPPLLNGCTNAHKSELDLNLDVDDDVLPQNGRVKEESNICEDKSSRYPVKSMNLLNQAKGRPSAGTLIVCPTSVLRQWAEELRSKVTSQTNLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPSADKDDEEKGNVEDQAVSSRKRKCPSNSSKGGKKRSDGTVPEANARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYDVYISFCSKIKNPISRNPTNGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSMEERDFYYKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKTLPQEKQISLLQCLEASLALCSICNDPPEDAFVSVCGHVFCNQCICEHLTGDDNQCPAANCKNPLSTSRVFSKATLNSCLSDQGCDNSPGCSGSEAEEFEPWSQSQPYESSKTKAALEVLKSLCKPQSYTSKSSSEHSTFRKDNDCPGNPSNADNGKSFIDSHEHQNLSDDNRCHGDSVTVVGDKAIVFSQWTRMLDLLEACLKKSSINYRRLDGTMSVVARDKAVKDFNTLPEVSVIIMSLKAASLGLNLVVASHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKDTVEDRILALQQKKRMMVASAFGEDGTGDRQSRLTVDDLKYLFMM* 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2313 1304 MobiDBLite consensus disorder prediction 119 149 - -
Pvu2g2313 1304 Gene3D - 520 609 IPR038718 -
Pvu2g2313 1304 SMART ring_2 987 1025 IPR001841 -
Pvu2g2313 1304 Pfam SNF2-related domain 570 948 IPR000330 GO:0005524|GO:0140658
Pvu2g2313 1304 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 565 833 IPR014001 -
Pvu2g2313 1304 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 473 1303 - -
Pvu2g2313 1304 Gene3D - 761 872 IPR038718 -
Pvu2g2313 1304 Gene3D - 644 743 IPR038718 -
Pvu2g2313 1304 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 473 1303 - -
Pvu2g2313 1304 CDD SF2_C_SNF 1149 1256 - -
Pvu2g2313 1304 CDD DEXDc_SHPRH-like 550 871 - -
Pvu2g2313 1304 Pfam Helicase conserved C-terminal domain 1147 1246 IPR001650 -
Pvu2g2313 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 535 871 IPR027417 -
Pvu2g2313 1304 Pfam Zinc finger, C3HC4 type (RING finger) 987 1023 IPR018957 GO:0046872
Pvu2g2313 1304 MobiDBLite consensus disorder prediction 1094 1130 - -
Pvu2g2313 1304 MobiDBLite consensus disorder prediction 48 64 - -
Pvu2g2313 1304 ProSitePatterns Zinc finger RING-type signature. 1002 1011 IPR017907 -
Pvu2g2313 1304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 972 1038 IPR013083 -
Pvu2g2313 1304 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1140 1299 IPR001650 -
Pvu2g2313 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 879 1303 IPR027417 -
Pvu2g2313 1304 MobiDBLite consensus disorder prediction 42 64 - -
Pvu2g2313 1304 Gene3D - 886 1304 IPR027417 -
Pvu2g2313 1304 MobiDBLite consensus disorder prediction 722 766 - -
Pvu2g2313 1304 SUPERFAMILY RING/U-box 984 1038 - -
Pvu2g2313 1304 MobiDBLite consensus disorder prediction 724 745 - -
Pvu2g2313 1304 ProSiteProfiles Zinc finger RING-type profile. 987 1026 IPR001841 -
Pvu2g2313 1304 SMART ultradead3 546 848 IPR014001 -
Pvu2g2313 1304 SMART helicmild6 1163 1246 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2313 Pvu-Chr2 38940277 38947982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2313 473 1303 RAD5 or RAD16-like Gene Family AT1G61140 60.731 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu2g2313 SNF2_N 5.3e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2313 - - gmx:100802436 2090.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2313 2 38940277 38947982 Pvu6g1962 6 29724873 29733017 PCT