Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2275 ATGGGTAGATCACCTTGTTGTGACAAAAATGGCCTCAAGAAAGGACCCTGGACAACAGAAGAAGACCAGAAACTTGTTGATTACATTCAGAAACATGGCTACGGCAATTGGAGAGTACTCCCAAAGAATGCTGGGTTGCAAAGGTGTGGAAAGAGTTGTAGACTCCGATGGACAAACTATCTCCGACCAGATATAAAGCGTGGTCGATTCACTTTTGAAGAGGAAGAGACCATAATACAACTACATAGCATTCTTGGTAACAAGTGGTCAGCTATTGCTTCTCGTTTGCCTGGAAGAACAGACAATGAAATCAAGAATTACTGGAATACACACATTAGAAAAAGGCTTCTAAGGATGGGAATTGACCCCGTGACACATAGGCCAAGGCTTGATCTTTTGGACCTCTCTTCCATCCTAAGTTCATCCCTTTATGGTCCAACACAGATGAACATCCAAAGACTGTTTGGTACACAGGCAATGGTGAACCCTGAACTCTTGAAGCTTGCTTCATCGCTCTTTTCTTCTCAGCAACGTGAAAACCTCAACATGTGCGCACAAAATTGTGATCCCCAAATTAACCAAATCCCACACCTGGTACAAACTCAGGACTTTGCTCAAGAACCATGTAAAACACTAGACAATACAATGAATCCTCCTTGTTCTTCATTGTCATGGCCTTTTGCTGAAGAAGAGTTGGTTGAATGCAATATGAACCCGTACCCTTCTGTTTTCCATGACTCTTGCTTCCAACAACATTCTCAACCGAGTGATTTGCAATGCAACGGAATTGATACAAGTTATGTTGCTCAATTACCAAGCTATAACTACCATGGCTCTGATTATGACGCAAATCTTATGGACCCTCCAATGTCTGAATCCTCAACCTATAACCATTCCCATAACAGCAATCAGAACTTCGGCTTCGCTTCAGTTATGTCAACGCCTTCATCAAGCCCCACGCCGTTGAATTCGAACTCGACGCATGTCAATGGAAGTAGCAGCACTGAGGATGAGATAGAAAGCTATGTCAGCAGCAACTTGTTGAGATTTGAAATCCCAAACATGTTAGGTGTGAATGAGTTCCTATAG 1089 0.427 MGRSPCCDKNGLKKGPWTTEEDQKLVDYIQKHGYGNWRVLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFTFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHRPRLDLLDLSSILSSSLYGPTQMNIQRLFGTQAMVNPELLKLASSLFSSQQRENLNMCAQNCDPQINQIPHLVQTQDFAQEPCKTLDNTMNPPCSSLSWPFAEEELVECNMNPYPSVFHDSCFQQHSQPSDLQCNGIDTSYVAQLPSYNYHGSDYDANLMDPPMSESSTYNHSHNSNQNFGFASVMSTPSSSPTPLNSNSTHVNGSSSTEDEIESYVSSNLLRFEIPNMLGVNEFL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2275 362 CDD SANT 69 112 IPR001005 -
Pvu2g2275 362 CDD SANT 16 61 IPR001005 -
Pvu2g2275 362 PANTHER TRANSCRIPTION FACTOR MYB41 1 357 - -
Pvu2g2275 362 SMART sant 66 114 IPR001005 -
Pvu2g2275 362 SMART sant 13 63 IPR001005 -
Pvu2g2275 362 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu2g2275 362 Gene3D - 69 116 - -
Pvu2g2275 362 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu2g2275 362 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu2g2275 362 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pvu2g2275 362 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu2g2275 362 Gene3D - 13 66 - -
Pvu2g2275 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 357 - -
Pvu2g2275 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu2g2275 362 MobiDBLite consensus disorder prediction 307 337 - -
Pvu2g2275 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2275 Pvu-Chr2 38464409 38465933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2275 1 362 MYB Transcription Factor Family AT4G21440 55.585 2.00e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu2g2275 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2275 K09422 - gmx:100810143 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2275 2 38464409 38465933 Pvu6g1999 6 30014967 30016543 PCT